Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3 123 1e-22 seq17 89.7 2e-12 seq13 86.0 2e-11 >seq3 Length=2676204 Score = 123 bits (136), Expect = 1e-22 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 391060 TCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTG 391119 ||||||| || || || || || || || || ||||| || ||||| || || | ||| | Sbjct 1950223 TCGTTAAGACTCTTACCGGAAAGACCATCACCCTTGAGGTCGAATCTTCAGACACCATCG 1950164 Query 391120 AAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAA 391179 | |||| || |||||||| |||||||| |||||||| || ||||||||||| | Sbjct 1950163 ACAACGTTAAGTCTAAGATTCAAGACAAGGAAGGCATTCCTCCCGACCAACAACGTTTGA 1950104 Query 391180 TTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGG 391239 ||||| | || || ||||| ||||| || | || | | ||||||||||| | |||| Sbjct 1950103 TTTTCGCTGGAAAGCAACTGGAAGACGGTCGCACCCTTTCCGATTATAATATCCAGAAGG 1950044 Query 391240 ATGCAACACTTCACTTAGTATTAAGACT 391267 | | || |||||||| || | ||||| Sbjct 1950043 AGTCTACCCTTCACTTGGTCCTCAGACT 1950016 Score = 114 bits (126), Expect = 5e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||| || || ||||| | || || ||||| || Sbjct 1949777 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATTACATTAGAGGTGGAATCGTCA 1949718 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | ||| ||| ||||| || ||||| || ||||| ||||||||| Sbjct 1949717 GATACCATTGATAATGTAAAATCAAAGATTCAGGACAAGGAGGGCATTCCACCTGATCAA 1949658 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| || || || |||| || ||| | || || || ||||| | ||||||| ||| Sbjct 1949657 CAACGATTGATCTTTGCAGGAAAGCAATTGGAGGACGGCAGAACCCTTTCGGATTACAAT 1949598 Query 391230 ATTGATAAGGA 391240 ||| | ||||| Sbjct 1949597 ATTCAAAAGGA 1949587 Score = 105 bits (116), Expect = 3e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || || || || || ||| | || ||||||||||| Sbjct 1950005 ATGCAGATCTTCGTCAAGACCCTTACCGGAAAGACAATCACTTTGGAGGTTGAATCATCG 1949946 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | | || ||| || ||||||||||| || || || || |||||| Sbjct 1949945 GATACCATCGACAATGTGAAGTCAAAGATCCAAGATAAGGAGGGTATCCCACCCGATCAA 1949886 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | || || | || || |||||||| ||||| | || | ||||||| || Sbjct 1949885 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGTCGTACACTTTCGGATTACAAC 1949826 Query 391230 ATTGATAAGGA 391240 ||| | ||||| Sbjct 1949825 ATTCAAAAGGA 1949815 Score = 96.9 bits (106), Expect = 1e-14 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 391072 TGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAAC 391131 |||| ||||| |||||||| || || ||||| || || | ||| || | | || Sbjct 1950494 TGACCGGTAAGACTATTACCCTCGAGGTTGAGTCCAGCGACACCATCGACAATGTCAAGT 1950435 Query 391132 AAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGA 391191 || || || || ||||| ||||||||||| || ||||| ||||| |||||| | || | Sbjct 1950434 CCAAGATCCAGGACAAGGAGGGAATTCCTCCCGACCAACAGCGTTTGATTTTCGCCGGAA 1950375 Query 391192 AACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTC 391251 |||||||||||||||| | || ||| || || || || | || || | || || | Sbjct 1950374 AACAACTTGAAGATGGTCGCACCTTGAGTGACTACAACATCCAGAAAGAGTCTACTCTCC 1950315 Query 391252 ACTTAGTATTAAGACT 391267 |||| || | ||||| Sbjct 1950314 ACTTGGTCCTCAGACT 1950299 >seq17 Length=875485 Score = 89.7 bits (98), Expect = 2e-12 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112 |||| ||||| || || || || || || || || || ||||| || || || || || Sbjct 658059 AATAGCTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGAC 658118 Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172 | ||| || | | || || || || || ||||| ||||||||||| ||||||||| Sbjct 658119 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCCGATCAACAA 658178 Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATT 391232 ||||| || ||| | || || ||| | ||||| ||| | ||| | | ||||| || || Sbjct 658179 CGTTTGATCTTCGCTGGAAAGCAATTGGAAGACGGACGTACTCTCTCAGATTACAACATC 658238 Query 391233 GATAAGG 391239 | |||| Sbjct 658239 CAAAAGG 658245 >seq13 Length=1254118 Score = 86.0 bits (94), Expect = 2e-11 Identities = 238/362 (66%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 451242 CTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATA 451301 ||||||| || |||| | ||| |||| || ||||| ||| || ||| ||| Sbjct 582346 CTCCTGAGGAGGTTTCCGCCATGATTCTCGGAAAGATGAAGGAAGTCGCCGAATCATACC 582405 Query 451302 TTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAAC 451361 | || | ||||| | ||||| |||||||||| || || ||||| || ||| Sbjct 582406 TCGGAAAGACTGTTACCCACGCAGTTGTTACTGTTCCAGCCTACTTCAACGACAACCAAA 582465 Query 451362 GGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATG 451421 | ||||| || || ||||| || ||||| ||||| || ||||| || || | || | Sbjct 582466 GACAAGCCACCAAGGATGCCGGTATCATTGCCGGTTTGAACGTTCTCCGTATCGTCAACG 582525 Query 451422 AACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaa 451481 ||||||| || || ||| | || || || | ||| || | ||| ||| ||| Sbjct 582526 AACCTACCGCCGCAGCTATTGCCTACGGTTT-GGACAAG--ACTGAAGGTGAACGTCAAA 582582 Query 451482 aTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAG 451541 |||| || | |||| | ||||||||||| ||| |||| | || || ||||| Sbjct 582583 TTATT---GTCTATGATCTCGGTGGAGGAACCTTCGATGTTTCTCTTCTCTCCATTGATC 582639 Query 451542 ATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTG 451601 ||| || ||||| || | || ||||| ||||| | ||||| |||||| | | Sbjct 582640 GTGGTGTCTTTGAGGTTCTTTCTACTGCCGGTGACACTCACTTGGGAGGAGAAGATTTCG 582699 Query 451602 AT 451603 || Sbjct 582700 AT 582701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975707616282008