Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1 132 4e-25 seq3 107 1e-17 seq44 102 6e-16 seq13 87.8 1e-11 >seq1 Length=3942387 Score = 132 bits (146), Expect = 4e-25 Identities = 173/236 (73%), Gaps = 5/236 (2%) Strand=Plus/Minus Query 668849 TTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCT 668908 ||||| || || ||||||||| || | ||||||||||||||||| |||||||| | ||| Sbjct 1100606 TTAAG-GGCAAGGAAGGTCGTCTTCGTGGAAATTTGATGGGAAAGCGTGTCGACTTCTCT 1100548 Query 668909 GCACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTT 668968 || ||||| || |||||| |||||||||| || |||| |||| |||||||| |||| Sbjct 1100547 GCCCGTACTGTCATTACTGGTGATCCCAATCTTTCTCTAGATGAGGTTGGTGTCCCTCGA 1100488 Query 668969 ATTATTGCTAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGAGTATTTG 669028 | |||||| | || || || | | || | ||| ||| || ||||| || | ||| Sbjct 1100487 AGTATTGCCAGAATCCTCACATATCCGGAGACTGTTACACCACTGAATATCGATAAATTG 1100428 Query 669029 ACTCAATTAGTGAAAAATGGT--AAAAGAGTATATCCGGGTGCCAATTTTGTAATC 669082 ||| | || ||||||||| | | ||| |||| ||||| || | ||| ||| Sbjct 1100427 CATCAGCTTGTCAAAAATGGTCCAGATGAG--CATCCTGGTGCTAAATATGTCATC 1100374 Score = 86.0 bits (94), Expect = 5e-11 Identities = 204/306 (67%), Gaps = 8/306 (3%) Strand=Plus/Plus Query 518025 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 518084 |||| ||||||| ||||||||| | || | || | ||||| | || ||| | | Sbjct 139261 TATCGAAATCTTGACCTCCCAAATGGGTGTCACCGGCAGTAGCCTTAACAGTGAAGACAC 139320 Query 518085 CATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 518144 || ||| | | ||||| ||||| ||||||||||| | ||| | || || | Sbjct 139321 CACCTTGGATGTTAAGAAGAGAAACATCGAAAGTTCCACCACCAAGATCGTAGATGAGAA 139380 Query 518145 CATTCATTTCTTTGTCTTGGTTTTT-----ATCAAGACCATACGCAAAAGCAGCAGCAGT 518199 | || ||||||| ||| ||| | ||||||| || |||| |||||||| || Sbjct 139381 CGTTACGCTCTTTGT--TGGACTTTCCAGCACCAAGACCGTAAGCAATGGCAGCAGCGGT 139438 Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 || || || || || | | || ||||||||||| || || ||||| || || || Sbjct 139439 AGGCTCGTTGATGATACGGAGGACGTTAAGACCAGCGATGGCACCAGCATCCTTGGTAGC 139498 Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA-CTTCTT 518318 ||| | ||| ||||| || || || || ||||| || ||||| | || | |||||| Sbjct 139499 TTGACGTTGGTTGTCGTTGAAGTAAGCTGGGACAGTGATGACGGCCTTTGTGACCTTCTT 139558 Query 518319 TACCAA 518324 |||| Sbjct 139559 GCCCAA 139564 Score = 86.0 bits (94), Expect = 5e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 366982 AAAATAAAAATTGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTT 367041 || || ||| | || || || || || |||||||||||||| || | |||| ||| || Sbjct 3569410 AATATCAAAGTCGTGGTTGCAACGATTGCATTTGGTATGGGCATCGACAAACAGGACGTC 3569351 Query 367042 AGAGTTGTTATTCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGT 367101 || | || ||||||||| | |||||| | | ||||||||||| || |||| ||| Sbjct 3569350 CGATTCGTCATTCATTATTGTCTTCCCAAAACCTTAGAAGGTTATTACCAGGAAACTGGA 3569291 Query 367102 AGAGCAGGTCGTGATGG 367118 |||| ||||| ||||| Sbjct 3569290 CGAGCTGGTCGAGATGG 3569274 >seq3 Length=2676204 Score = 107 bits (118), Expect = 1e-17 Identities = 246/368 (67%), Gaps = 3/368 (1%) Strand=Plus/Minus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 || || || ||||| | ||| || ||||| |||||||| || || |||| | |||||| Sbjct 1870006 ATTCCGTTAGCATCAAGATCGAAGGTGACCTCAATTTGTGGAACACCTCGTGGTGCAGGT 1869947 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 ||||| || | | || | |||| | || || || || ||| || || ||| Sbjct 1869946 GGGATACCAGTGAGCTCGAACTTGCCCAAAAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 1869887 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 |||||||| | |||||| || ||| ||| || || || | || | || || | Sbjct 1869886 CCCTCGAAGACTTGGATGAGGACACCAGGTTGGTTGTCAGAGAAGGTGGAGAAGACCTCG 1869827 Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 || || || || || || |||||||| ||| | |||||||| ||||| || Sbjct 1869826 GACTTCTTGGTTGGGATGGTGGTGTTTCTTGGAATGAGCTTGGTCATCTGTCCACCAGCA 1869767 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 517571 || || | ||| ||||| | || | |||||| | |||| || | || | | || Sbjct 1869766 GTCTCGATACCGAGAGACAATGGGGCGACATCGAGAAGGAGGATCTCGTTGGTGGACTTG 1869707 Query 517572 CATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 | | || | |||| ||||| || ||||||| |||||||| ||||||||||| ||| Sbjct 1869706 GAGGAAGTGTCACCAGAGAGAATGGCAGCTTGAACGGCAGCACCGTATGCAACAGCCTCA 1869647 Query 517631 TCAGGATT 517638 ||||| || Sbjct 1869646 TCAGGGTT 1869639 >seq44 Length=110725 Score = 102 bits (112), Expect = 6e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || || | |||||| || | ||| ||||||||||| || || | || ||| | ||| || Sbjct 53627 TTTTCCAAACCATAAGCGAGAGCGGCAGCAGTTGGCTCGTTGACAACTCTGAGAACGTTC 53686 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 | ||| |||||| || ||||| ||||| ||||| | ||| |||||||| || ||||| Sbjct 53687 AAACCGGCAATTTGACCAGCATCCTTAGTAGCTTGACGTTGGGAATCGTTGAAGTATGCG 53746 Query 518288 GGAACAGTAATAACGGCAT 518306 ||||| |||| ||||||| Sbjct 53747 GGAACGGTAACGACGGCAT 53765 >seq13 Length=1254118 Score = 87.8 bits (96), Expect = 1e-11 Identities = 191/284 (67%), Gaps = 13/284 (5%) Strand=Plus/Minus Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085 ||| |||||||| |||||||| | ||| | || | |||| || | || | || Sbjct 582701 ATCGAAATCTTCTCCTCCCAAGTGAGTGTCACCGGCAGTAGAAAGAACCTCAAAGACACC 582642 Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAA---AATAAG 518142 | |||| || | ||||| ||||| |||||| ||||| | |||| | ||||| Sbjct 582641 ACGATCAATGGAGAGAAGAGAAACATCGAAGGTTCCTCCACCGAGATCATAGACAATAAT 582582 Query 518143 T--ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 | || |||| | | |||||| || | ||| || |||| ||| || || || Sbjct 582581 TTGACGTTCACCT-TCAGTCTTG-------TCCAAACCGTAGGCAATAGCTGCGGCGGTA 582530 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 ||||| || | || | | ||| || | ||| ||||| | || ||||| || |||||| Sbjct 582529 GGTTCGTTGACGATACGGAGAACGTTCAAACCGGCAATGATACCGGCATCCTTGGTGGCT 582470 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 |||||||| ||||| || || || |||||||||| ||| || Sbjct 582469 TGTCTTTGGTTGTCGTTGAAGTAGGCTGGAACAGTAACAACTGC 582426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780801260476756