Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq1 132 4e-25
seq3 107 1e-17
seq44 102 6e-16
seq13 87.8 1e-11
>seq1
Length=3942387
Score = 132 bits (146), Expect = 4e-25
Identities = 173/236 (73%), Gaps = 5/236 (2%)
Strand=Plus/Minus
Query 668849 TTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCT 668908
||||| || || ||||||||| || | ||||||||||||||||| |||||||| | |||
Sbjct 1100606 TTAAG-GGCAAGGAAGGTCGTCTTCGTGGAAATTTGATGGGAAAGCGTGTCGACTTCTCT 1100548
Query 668909 GCACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTT 668968
|| ||||| || |||||| |||||||||| || |||| |||| |||||||| ||||
Sbjct 1100547 GCCCGTACTGTCATTACTGGTGATCCCAATCTTTCTCTAGATGAGGTTGGTGTCCCTCGA 1100488
Query 668969 ATTATTGCTAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGAGTATTTG 669028
| |||||| | || || || | | || | ||| ||| || ||||| || | |||
Sbjct 1100487 AGTATTGCCAGAATCCTCACATATCCGGAGACTGTTACACCACTGAATATCGATAAATTG 1100428
Query 669029 ACTCAATTAGTGAAAAATGGT--AAAAGAGTATATCCGGGTGCCAATTTTGTAATC 669082
||| | || ||||||||| | | ||| |||| ||||| || | ||| |||
Sbjct 1100427 CATCAGCTTGTCAAAAATGGTCCAGATGAG--CATCCTGGTGCTAAATATGTCATC 1100374
Score = 86.0 bits (94), Expect = 5e-11
Identities = 204/306 (67%), Gaps = 8/306 (3%)
Strand=Plus/Plus
Query 518025 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 518084
|||| ||||||| ||||||||| | || | || | ||||| | || ||| | |
Sbjct 139261 TATCGAAATCTTGACCTCCCAAATGGGTGTCACCGGCAGTAGCCTTAACAGTGAAGACAC 139320
Query 518085 CATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 518144
|| ||| | | ||||| ||||| ||||||||||| | ||| | || || |
Sbjct 139321 CACCTTGGATGTTAAGAAGAGAAACATCGAAAGTTCCACCACCAAGATCGTAGATGAGAA 139380
Query 518145 CATTCATTTCTTTGTCTTGGTTTTT-----ATCAAGACCATACGCAAAAGCAGCAGCAGT 518199
| || ||||||| ||| ||| | ||||||| || |||| |||||||| ||
Sbjct 139381 CGTTACGCTCTTTGT--TGGACTTTCCAGCACCAAGACCGTAAGCAATGGCAGCAGCGGT 139438
Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259
|| || || || || | | || ||||||||||| || || ||||| || || ||
Sbjct 139439 AGGCTCGTTGATGATACGGAGGACGTTAAGACCAGCGATGGCACCAGCATCCTTGGTAGC 139498
Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA-CTTCTT 518318
||| | ||| ||||| || || || || ||||| || ||||| | || | ||||||
Sbjct 139499 TTGACGTTGGTTGTCGTTGAAGTAAGCTGGGACAGTGATGACGGCCTTTGTGACCTTCTT 139558
Query 518319 TACCAA 518324
||||
Sbjct 139559 GCCCAA 139564
Score = 86.0 bits (94), Expect = 5e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 366982 AAAATAAAAATTGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTT 367041
|| || ||| | || || || || || |||||||||||||| || | |||| ||| ||
Sbjct 3569410 AATATCAAAGTCGTGGTTGCAACGATTGCATTTGGTATGGGCATCGACAAACAGGACGTC 3569351
Query 367042 AGAGTTGTTATTCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGT 367101
|| | || ||||||||| | |||||| | | ||||||||||| || |||| |||
Sbjct 3569350 CGATTCGTCATTCATTATTGTCTTCCCAAAACCTTAGAAGGTTATTACCAGGAAACTGGA 3569291
Query 367102 AGAGCAGGTCGTGATGG 367118
|||| ||||| |||||
Sbjct 3569290 CGAGCTGGTCGAGATGG 3569274
>seq3
Length=2676204
Score = 107 bits (118), Expect = 1e-17
Identities = 246/368 (67%), Gaps = 3/368 (1%)
Strand=Plus/Minus
Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333
|| || || ||||| | ||| || ||||| |||||||| || || |||| | ||||||
Sbjct 1870006 ATTCCGTTAGCATCAAGATCGAAGGTGACCTCAATTTGTGGAACACCTCGTGGTGCAGGT 1869947
Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393
||||| || | | || | |||| | || || || || ||| || || |||
Sbjct 1869946 GGGATACCAGTGAGCTCGAACTTGCCCAAAAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 1869887
Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453
|||||||| | |||||| || ||| ||| || || || | || | || || |
Sbjct 1869886 CCCTCGAAGACTTGGATGAGGACACCAGGTTGGTTGTCAGAGAAGGTGGAGAAGACCTCG 1869827
Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513
|| || || || || || |||||||| ||| | |||||||| ||||| ||
Sbjct 1869826 GACTTCTTGGTTGGGATGGTGGTGTTTCTTGGAATGAGCTTGGTCATCTGTCCACCAGCA 1869767
Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 517571
|| || | ||| ||||| | || | |||||| | |||| || | || | | ||
Sbjct 1869766 GTCTCGATACCGAGAGACAATGGGGCGACATCGAGAAGGAGGATCTCGTTGGTGGACTTG 1869707
Query 517572 CATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630
| | || | |||| ||||| || ||||||| |||||||| ||||||||||| |||
Sbjct 1869706 GAGGAAGTGTCACCAGAGAGAATGGCAGCTTGAACGGCAGCACCGTATGCAACAGCCTCA 1869647
Query 517631 TCAGGATT 517638
||||| ||
Sbjct 1869646 TCAGGGTT 1869639
>seq44
Length=110725
Score = 102 bits (112), Expect = 6e-16
Identities = 106/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227
|| || | |||||| || | ||| ||||||||||| || || | || ||| | ||| ||
Sbjct 53627 TTTTCCAAACCATAAGCGAGAGCGGCAGCAGTTGGCTCGTTGACAACTCTGAGAACGTTC 53686
Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287
| ||| |||||| || ||||| ||||| ||||| | ||| |||||||| || |||||
Sbjct 53687 AAACCGGCAATTTGACCAGCATCCTTAGTAGCTTGACGTTGGGAATCGTTGAAGTATGCG 53746
Query 518288 GGAACAGTAATAACGGCAT 518306
||||| |||| |||||||
Sbjct 53747 GGAACGGTAACGACGGCAT 53765
>seq13
Length=1254118
Score = 87.8 bits (96), Expect = 1e-11
Identities = 191/284 (67%), Gaps = 13/284 (5%)
Strand=Plus/Minus
Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085
||| |||||||| |||||||| | ||| | || | |||| || | || | ||
Sbjct 582701 ATCGAAATCTTCTCCTCCCAAGTGAGTGTCACCGGCAGTAGAAAGAACCTCAAAGACACC 582642
Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAA---AATAAG 518142
| |||| || | ||||| ||||| |||||| ||||| | |||| | |||||
Sbjct 582641 ACGATCAATGGAGAGAAGAGAAACATCGAAGGTTCCTCCACCGAGATCATAGACAATAAT 582582
Query 518143 T--ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200
| || |||| | | |||||| || | ||| || |||| ||| || || ||
Sbjct 582581 TTGACGTTCACCT-TCAGTCTTG-------TCCAAACCGTAGGCAATAGCTGCGGCGGTA 582530
Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260
||||| || | || | | ||| || | ||| ||||| | || ||||| || ||||||
Sbjct 582529 GGTTCGTTGACGATACGGAGAACGTTCAAACCGGCAATGATACCGGCATCCTTGGTGGCT 582470
Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304
|||||||| ||||| || || || |||||||||| ||| ||
Sbjct 582469 TGTCTTTGGTTGTCGTTGAAGTAGGCTGGAACAGTAACAACTGC 582426
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780801260476756
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |