Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq35 150 2e-31 >seq35 Length=307329 Score = 150 bits (166), Expect = 2e-31 Identities = 191/258 (74%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 154871 TATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTA-GACAGATAT 154929 ||||||||| ||||||||| |||| ||| || || ||| | | || | | | | || Sbjct 110608 TATTATGATCACATACCCAAGTACATTTGGAGTGTTCGAACCAGAGATCAAGGCTGC-AT 110550 Query 154930 GTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCAC 154989 || | || |||||| | |||||||||| |||||| | || || || || | ||||| | Sbjct 110549 GTGATATTGTTCATCAGCATGGTGGTCAAGTATATATGGACGGCGCCAACATGAATGCTC 110490 Query 154990 AGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATA 155049 || | ||| || ||| |||| |||||| |||||||| ||||| || | || | Sbjct 110489 AGATCGGATTATGTTCACCTGGTGAAATTGGTGCCGATGTATGCCATCTTAATCTTCACA 110430 Query 155050 AAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAA 155109 | |||||||||||||| ||||||||||| ||||||||||| ||||| || ||||| ||| Sbjct 110429 AGACATTCTGTATTCCTCATGGAGGTGGTGGTCCTGGCGTTGGTCCAATTGGTGT--CAA 110372 Query 155110 A--ACATCTCACACCATT 155125 | ||||| ||||||| Sbjct 110371 ATCTCATCTGGCACCATT 110354 Score = 141 bits (156), Expect = 1e-28 Identities = 200/281 (71%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 ||||||||| | || | | ||| | ||||| |||| | || ||||| ||||| ||| Sbjct 111807 GATATTGCTTTTGGAAATGCTCAACGTTTTGGAGTTCCATTTGGTTATGGTGGTCCACAT 111748 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 153866 ||||| ||||| || | ||||| || ||||||||||| || || | | | ||| Sbjct 111747 GCTGCTTTCTTCGCTGTTAGCGACAAATACAAGAGAAAGATTCCAGGACGTCTCATTGGT 111688 Query 153867 CAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAG 153926 || ||||| |||| |||||||| ||||| || | || |||||||| ||| Sbjct 111687 GTATCGAAGGATAGACTAGGTGATAAAGCAATGAGATTGGCTTTGCAAACTAGAGAACAG 111628 Query 153927 CATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAAT 153986 |||||| | |||| || || || ||||| | ||||| ||||||||| | |||| || Sbjct 111627 CATATCCGCCGAGAAAAGGCTACTAGTAATGTGTGCACGGCTCAGGCATTATTGGCCAAC 111568 Query 153987 ATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACT 154027 ||| || ||||||||||| || ||||| |||| ||||| Sbjct 111567 ATGAGTGCATTCTATGCAGTCTACCATGGACCAGAAGGACT 111527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579209715691840