Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq35 168 8e-37
>seq35
Length=307329
Score = 168 bits (186), Expect = 8e-37
Identities = 195/258 (76%), Gaps = 6/258 (2%)
Strand=Plus/Minus
Query 159546 TATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCA-GACAGATAT 159604
||||||||| ||||| ||| |||| ||| || || ||| || | |||| | | | ||
Sbjct 110608 TATTATGATCACATACCCAAGTACATTTGGAGTGTTCGAACCAGAGATCAAGGCTGC-AT 110550
Query 159605 GTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCAC 159664
|| | ||||||||| || |||||||||| |||||| | || || || || | ||||| |
Sbjct 110549 GTGATATTGTTCATCAGCATGGTGGTCAAGTATATATGGACGGCGCCAACATGAATGCTC 110490
Query 159665 AGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATA 159724
|| | || || ||| |||| |||||| |||||||| ||||| || | || |
Sbjct 110489 AGATCGGATTATGTTCACCTGGTGAAATTGGTGCCGATGTATGCCATCTTAATCTTCACA 110430
Query 159725 AGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAA 159784
|||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||| |||
Sbjct 110429 AGACATTCTGTATTCCTCATGGAGGTGGTGGTCCTGGCGTTGGTCCAATTGGTGT--CAA 110372
Query 159785 A--ACATCTCACACCATT 159800
| ||||| |||||||
Sbjct 110371 ATCTCATCTGGCACCATT 110354
Score = 120 bits (132), Expect = 4e-22
Identities = 195/281 (69%), Gaps = 0/281 (0%)
Strand=Plus/Minus
Query 158422 GACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCAT 158481
|| |||||| | || | | ||| | ||||| |||| | || || || ||||| |||
Sbjct 111807 GATATTGCTTTTGGAAATGCTCAACGTTTTGGAGTTCCATTTGGTTATGGTGGTCCACAT 111748
Query 158482 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 158541
||||| ||||| || | ||||| || ||||||||||| || || | | | |||
Sbjct 111747 GCTGCTTTCTTCGCTGTTAGCGACAAATACAAGAGAAAGATTCCAGGACGTCTCATTGGT 111688
Query 158542 CAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAG 158601
|| ||||| |||| |||||||| ||||| || | || |||||||| |||
Sbjct 111687 GTATCGAAGGATAGACTAGGTGATAAAGCAATGAGATTGGCTTTGCAAACTAGAGAACAG 111628
Query 158602 CATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAAT 158661
|||||| | |||| || || || ||||| | ||||| || || ||| | |||| ||
Sbjct 111627 CATATCCGCCGAGAAAAGGCTACTAGTAATGTGTGCACGGCTCAGGCATTATTGGCCAAC 111568
Query 158662 ATGTCTGGGTTCTATGCAGCATATCATGGTGCAGATGGACT 158702
||| || |||||||||| || ||||| |||| |||||
Sbjct 111567 ATGAGTGCATTCTATGCAGTCTACCATGGACCAGAAGGACT 111527
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588048068627360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |