Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq35 168 8e-37 >seq35 Length=307329 Score = 168 bits (186), Expect = 8e-37 Identities = 195/258 (76%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 159546 TATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCA-GACAGATAT 159604 ||||||||| ||||| ||| |||| ||| || || ||| || | |||| | | | || Sbjct 110608 TATTATGATCACATACCCAAGTACATTTGGAGTGTTCGAACCAGAGATCAAGGCTGC-AT 110550 Query 159605 GTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCAC 159664 || | ||||||||| || |||||||||| |||||| | || || || || | ||||| | Sbjct 110549 GTGATATTGTTCATCAGCATGGTGGTCAAGTATATATGGACGGCGCCAACATGAATGCTC 110490 Query 159665 AGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATA 159724 || | || || ||| |||| |||||| |||||||| ||||| || | || | Sbjct 110489 AGATCGGATTATGTTCACCTGGTGAAATTGGTGCCGATGTATGCCATCTTAATCTTCACA 110430 Query 159725 AGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAA 159784 |||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||| ||| Sbjct 110429 AGACATTCTGTATTCCTCATGGAGGTGGTGGTCCTGGCGTTGGTCCAATTGGTGT--CAA 110372 Query 159785 A--ACATCTCACACCATT 159800 | ||||| ||||||| Sbjct 110371 ATCTCATCTGGCACCATT 110354 Score = 120 bits (132), Expect = 4e-22 Identities = 195/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 158422 GACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCAT 158481 || |||||| | || | | ||| | ||||| |||| | || || || ||||| ||| Sbjct 111807 GATATTGCTTTTGGAAATGCTCAACGTTTTGGAGTTCCATTTGGTTATGGTGGTCCACAT 111748 Query 158482 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 158541 ||||| ||||| || | ||||| || ||||||||||| || || | | | ||| Sbjct 111747 GCTGCTTTCTTCGCTGTTAGCGACAAATACAAGAGAAAGATTCCAGGACGTCTCATTGGT 111688 Query 158542 CAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAG 158601 || ||||| |||| |||||||| ||||| || | || |||||||| ||| Sbjct 111687 GTATCGAAGGATAGACTAGGTGATAAAGCAATGAGATTGGCTTTGCAAACTAGAGAACAG 111628 Query 158602 CATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAAT 158661 |||||| | |||| || || || ||||| | ||||| || || ||| | |||| || Sbjct 111627 CATATCCGCCGAGAAAAGGCTACTAGTAATGTGTGCACGGCTCAGGCATTATTGGCCAAC 111568 Query 158662 ATGTCTGGGTTCTATGCAGCATATCATGGTGCAGATGGACT 158702 ||| || |||||||||| || ||||| |||| ||||| Sbjct 111567 ATGAGTGCATTCTATGCAGTCTACCATGGACCAGAAGGACT 111527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588048068627360