Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3 163 6e-35 seq18 149 1e-30 seq38 100 6e-16 >seq3 Length=2676204 Score = 163 bits (180), Expect = 6e-35 Identities = 161/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| | || | |||||| || ||||| || || ||||| ||||||| ||| || | Sbjct 1950016 AGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATATTATAATCGGAAAGGGTGCGA 1950075 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| || ||||| || ||||| || | ||||||||||| |||||||||||||| Sbjct 1950076 CCGTCTTCCAGTTGCTTTCCAGCGAAAATCAAACGTTGTTGGTCGGGAGGAATGCCTTCC 1950135 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||||||||| || ||| ||||| || |||||||| ||| ||| || |||||||| Sbjct 1950136 TTGTCTTGAATCTTAGACTTAACGTTGTCGATGGTGTCTGAAGATTCGACCTCAAGGGTG 1950195 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 | |||||||| || | ||| || |||| Sbjct 1950196 ATGGTCTTTCCGGTAAGAGTCTTAACGA 1950223 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 || ||||||||||||||||| | ||| ||||| || || || | ||||| ||||| ||| Sbjct 1949587 TCCTTTTGAATATTGTAATCCGAAAGGGTTCTGCCGTCCTCCAATTGCTTTCCTGCAAAG 1949646 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 || | ||||||||| || || |||||||| || ||||| ||||| ||| || || || Sbjct 1949647 ATCAATCGTTGTTGATCAGGTGGAATGCCCTCCTTGTCCTGAATCTTTGATTTTACATTA 1949706 Query 195070 TCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129 |||||||| || || |||||| || | |||| ||||| || |||||||| || || Sbjct 1949707 TCAATGGTATCTGACGATTCCACCTCTAATGTAATGGTCTTGCCAGTCAAAGTCTTGACA 1949766 Query 195130 AACACTTGCAT 195140 || | |||||| Sbjct 1949767 AAGATTTGCAT 1949777 >seq18 Length=865119 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | ||||||||||||||| ||||| || |||||||||| ||| || | |||||| Sbjct 543458 AACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGGCCATCT 543399 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 ||||| ||||| || |||||||| | ||| |||||||| || ||||| || || ||||| Sbjct 543398 TCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTTGTCC 543339 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || || || |||||| || || |||||||| ||| || || || ||||| | || Sbjct 543338 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTT 543279 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || ||||| | ||||| Sbjct 543278 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 543247 >seq38 Length=269250 Score = 100 bits (110), Expect = 6e-16 Identities = 188/274 (69%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648 ||||||||| | |||| | | ||||| ||||||||| | || || | |||||||||||| Sbjct 55857 TTCTACGCCTTGTGGATTCCTGATCTATTCATGAAGCGTGTTGAAAAGAATGGGGATTGG 55916 Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708 | || | || ||||| ||| || || | | ||||||||||| ||||||||| Sbjct 55917 ACTCTCATGTGCCCCAACGAATGTCCAGGTTTAGCAGATGTTTATGGCGAGGAGTTCGAG 55976 Query 160709 ACTCTTTATGAAAGATACGAAAAAG-AGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAGA 160767 |||| || || | |||||||| | ||| ||| | | ||| | ||||| ||| | Sbjct 55977 GCTCTCTACGAGGGTTACGAAAAGGCAGGCAAGGGTC-GCAAGACTATCAAGGCTCAAAA 56035 Query 160768 ACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAA 160827 ||| ||| | ||| |||| || ||| |||| || | ||||| || ||||| Sbjct 56036 ACTTTGGTACTCCATTCTTGAGGCTCAAACCGAGACCGGAAATCCCTTCATGCTTTACAA 56095 Query 160828 GGATGCCATCTGTCGCAAGAGTAACCAGAAGAAC 160861 |||||| | ||||| ||||| |||||| Sbjct 56096 GGATGCATGCAACAAGAAGAGCAACCAAAAGAAC 56129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109475544310742