Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq18 109 4e-19 seq3 91.5 1e-13 >seq18 Length=865119 Score = 109 bits (120), Expect = 4e-19 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 || |||||||||| ||| || || || ||||| || || |||||| | || |||| Sbjct 543458 AACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGGCCATCT 543399 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 || || || |||||||| || || | ||| || ||||| | || | ||||||||||| Sbjct 543398 TCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTTGTCC 543339 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTAT 34945 ||||| ||||| || | ||||| || | |||||| |||| ||| || Sbjct 543338 TGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGAT 543283 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||| |||||||| ||||| || ||||||||||| Sbjct 543282 GGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 543247 >seq3 Length=2676204 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | |||||||| || ||||| || || ||||||||| ||| | || ||| Sbjct 1949569 ACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAAAGGGTTCTGCCGTCCTCC 1949628 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || ||||| ||||| || | |||||| || || | || | ||||||||||| | Sbjct 1949629 AATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCCTCCTTGTCCTGA 1949688 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||| || || |||| || || | || || || | || ||||| Sbjct 1949689 ATCTTTGATTTTAC--AT--TATCAATGGTATCTGACGATTCCACCTCTAATGTAATGGT 1949744 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || | |||||| |||||||| |||||| Sbjct 1949745 CTTGCCAGTCAAAGTCTTGACAAAGATTTGCATA 1949778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631914542928