Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq38 179 4e-40
seq35 95.1 1e-14
>seq38
Length=269250
Score = 179 bits (198), Expect = 4e-40
Identities = 515/789 (65%), Gaps = 6/789 (1%)
Strand=Plus/Minus
Query 47961 ATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAA 48020
|||||||||| || | || || | ||||| ||||| |||||||||||||| ||
Sbjct 56140 ATAGTACCCAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAAG 56081
Query 48021 GGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATA 48080
|| |||| || || | |||| |||| || || | ||||| | |||||| |||
Sbjct 56080 GGATTTCCGGTCTCGGTTTGAGCCTCAAGAATGGAGTACCAAAGTTTTTGAGCCTTGATA 56021
Query 48081 ACAGCTCTAGCTTTATTATCATGTTCGTATT--TAGTATATAACTTCTCAAATTCATCCC 48138
| | | || | | |||||| | ||| | | | ||| || || || |
Sbjct 56020 GTCTTGCGACCCTTGCCTGCCTTTTCGTAACCCTCGTAGAGAGC--CTCGAACTCCTCGC 55963
Query 48139 CATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCAT 48198
|||| |||| |||| || |||||||| || || ||||| | | ||||||| ||| |
Sbjct 55962 CATAAACATCTGCTAAACCTGGACATTCGTTGGGGCACATGAGAGTCCAATCCCCATTCT 55903
Query 48199 TTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTC 48258
||| || | |||| |||| ||| || ||||| | || || | ||| | | |
Sbjct 55902 TTTCAACACGCTTCATGAATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCAC 55843
Query 48259 TTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCC 48318
| |||||| |||||| ||| | || ||||| || || | | ||| |||||||
Sbjct 55842 GAACTTCTTCTTTGCCATGATTTTTGCGTAGATCAAGGAACTCAAAAACATCCGCATGCC 55783
Query 48319 ATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATC 48378
|||| || | || | || | |||| || || |||||||| |||||||| | |||||
Sbjct 55782 ATGGCTCAAGGTAAACAGCAAAGGCACCAGGACGCTTATTACCACCTTGATCAACATATC 55723
Query 48379 TGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTC 48438
||||||| ||||| |||||| | ||| || || ||||| || || | || ||||| |
Sbjct 55722 TGGCAGTGTTGTTGAAAACTCGGAGCATAGGAACGATACCGTTAGAGTTTCCGTTGGTAC 55663
Query 48439 CCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCA 48498
| | ||| || ||| |||| | || ||| | ||| |||||||| ||
Sbjct 55662 CGGCAATGTATGCGCCAGTAGCACGGATTCGGTGAATGTTGAGACCAATACCACCGGCAT 55603
Query 48499 TTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTA 48558
| || || || | |||||| || | ||||| ||||| || || ||||| || ||
Sbjct 55602 TCTTTGAGATCATAGCACAAATCTTCAAAGTATCGTAAATACCATCAATACTGTCCTCCT 55543
Query 48559 TCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATG 48618
|||| | | || || || || | ||| | || ||| || | | || | ||
Sbjct 55542 TCATGTCGATAAGGAAGCATGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTG 55483
Query 48619 TTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAAT 48678
|||| || ||||| | || | || | ||| | ||| || |||||||| ||| || |
Sbjct 55482 TTGGCGAGGCATGTGTGAAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTT 55423
Query 48679 CTATATC-CCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA 48737
| ||||| || | || ||||| | | |||||||| | ||| | ||| || | |||
Sbjct 55422 CAATATCATCACCG-TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCT 55364
Query 48738 ACAATTTTG 48746
||| ||||
Sbjct 55363 GCAACTTTG 55355
>seq35
Length=307329
Score = 95.1 bits (104), Expect = 1e-14
Identities = 179/261 (69%), Gaps = 7/261 (3%)
Strand=Plus/Minus
Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318
|||| || ||||| || || || || || || ||||| || |||| ||| |||| |
Sbjct 73920 TTTCGGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCTGGGA 73861
Query 19319 TCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378
|||| ||||||| || |||| || ||||| || || || || ||||| || || |
Sbjct 73860 TCTGAACTTCACCACTGAATCGCTCAACCAAGTTCTCGTTGACAATTCCGTCTGATGCGG 73801
Query 19379 CAAAAAATGCTAATACATGTTTAATAAAAT---GTTTTTCATC--TGAGGTTAATGTATT 19433
| || ||||| | || || || || | | | ||||| |||| | ||| |
Sbjct 73800 CGAAGAATGCGAGAACGTGGGAGATGAAGTAACGCTCGTCATCATTGAGTCTGTTGT--T 73743
Query 19434 CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493
||| || | | ||| || || ||||| | ||||| | ||||| ||||| ||||||||
Sbjct 73742 CCAGTCGTGGAGATCCTTTGACAAATCAATCTCTTCTGCGGTCCAGAAAGATGCCTCTGC 73683
Query 19494 TTTTTTATACATGTTCCATAT 19514
|||||| ||||| | ||| ||
Sbjct 73682 TTTTTTGTACATCTGCCAGAT 73662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562105806770640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |