Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq38 179 4e-40 seq35 95.1 1e-14 >seq38 Length=269250 Score = 179 bits (198), Expect = 4e-40 Identities = 515/789 (65%), Gaps = 6/789 (1%) Strand=Plus/Minus Query 47961 ATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAA 48020 |||||||||| || | || || | ||||| ||||| |||||||||||||| || Sbjct 56140 ATAGTACCCAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAAG 56081 Query 48021 GGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATA 48080 || |||| || || | |||| |||| || || | ||||| | |||||| ||| Sbjct 56080 GGATTTCCGGTCTCGGTTTGAGCCTCAAGAATGGAGTACCAAAGTTTTTGAGCCTTGATA 56021 Query 48081 ACAGCTCTAGCTTTATTATCATGTTCGTATT--TAGTATATAACTTCTCAAATTCATCCC 48138 | | | || | | |||||| | ||| | | | ||| || || || | Sbjct 56020 GTCTTGCGACCCTTGCCTGCCTTTTCGTAACCCTCGTAGAGAGC--CTCGAACTCCTCGC 55963 Query 48139 CATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCAT 48198 |||| |||| |||| || |||||||| || || ||||| | | ||||||| ||| | Sbjct 55962 CATAAACATCTGCTAAACCTGGACATTCGTTGGGGCACATGAGAGTCCAATCCCCATTCT 55903 Query 48199 TTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTC 48258 ||| || | |||| |||| ||| || ||||| | || || | ||| | | | Sbjct 55902 TTTCAACACGCTTCATGAATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCAC 55843 Query 48259 TTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCC 48318 | |||||| |||||| ||| | || ||||| || || | | ||| ||||||| Sbjct 55842 GAACTTCTTCTTTGCCATGATTTTTGCGTAGATCAAGGAACTCAAAAACATCCGCATGCC 55783 Query 48319 ATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATC 48378 |||| || | || | || | |||| || || |||||||| |||||||| | ||||| Sbjct 55782 ATGGCTCAAGGTAAACAGCAAAGGCACCAGGACGCTTATTACCACCTTGATCAACATATC 55723 Query 48379 TGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTC 48438 ||||||| ||||| |||||| | ||| || || ||||| || || | || ||||| | Sbjct 55722 TGGCAGTGTTGTTGAAAACTCGGAGCATAGGAACGATACCGTTAGAGTTTCCGTTGGTAC 55663 Query 48439 CCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCA 48498 | | ||| || ||| |||| | || ||| | ||| |||||||| || Sbjct 55662 CGGCAATGTATGCGCCAGTAGCACGGATTCGGTGAATGTTGAGACCAATACCACCGGCAT 55603 Query 48499 TTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTA 48558 | || || || | |||||| || | ||||| ||||| || || ||||| || || Sbjct 55602 TCTTTGAGATCATAGCACAAATCTTCAAAGTATCGTAAATACCATCAATACTGTCCTCCT 55543 Query 48559 TCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATG 48618 |||| | | || || || || | ||| | || ||| || | | || | || Sbjct 55542 TCATGTCGATAAGGAAGCATGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTG 55483 Query 48619 TTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAAT 48678 |||| || ||||| | || | || | ||| | ||| || |||||||| ||| || | Sbjct 55482 TTGGCGAGGCATGTGTGAAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTT 55423 Query 48679 CTATATC-CCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA 48737 | ||||| || | || ||||| | | |||||||| | ||| | ||| || | ||| Sbjct 55422 CAATATCATCACCG-TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCT 55364 Query 48738 ACAATTTTG 48746 ||| |||| Sbjct 55363 GCAACTTTG 55355 >seq35 Length=307329 Score = 95.1 bits (104), Expect = 1e-14 Identities = 179/261 (69%), Gaps = 7/261 (3%) Strand=Plus/Minus Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 |||| || ||||| || || || || || || ||||| || |||| ||| |||| | Sbjct 73920 TTTCGGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCTGGGA 73861 Query 19319 TCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378 |||| ||||||| || |||| || ||||| || || || || ||||| || || | Sbjct 73860 TCTGAACTTCACCACTGAATCGCTCAACCAAGTTCTCGTTGACAATTCCGTCTGATGCGG 73801 Query 19379 CAAAAAATGCTAATACATGTTTAATAAAAT---GTTTTTCATC--TGAGGTTAATGTATT 19433 | || ||||| | || || || || | | | ||||| |||| | ||| | Sbjct 73800 CGAAGAATGCGAGAACGTGGGAGATGAAGTAACGCTCGTCATCATTGAGTCTGTTGT--T 73743 Query 19434 CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 ||| || | | ||| || || ||||| | ||||| | ||||| ||||| |||||||| Sbjct 73742 CCAGTCGTGGAGATCCTTTGACAAATCAATCTCTTCTGCGGTCCAGAAAGATGCCTCTGC 73683 Query 19494 TTTTTTATACATGTTCCATAT 19514 |||||| ||||| | ||| || Sbjct 73682 TTTTTTGTACATCTGCCAGAT 73662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562105806770640