Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq3 161 8e-34
seq1 109 4e-18
seq44 86.0 5e-11
>seq3
Length=2676204
Score = 161 bits (178), Expect = 8e-34
Identities = 394/591 (67%), Gaps = 6/591 (1%)
Strand=Plus/Plus
Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053
||| ||||| ||||| || || || || |||||| ||| | | | ||| || | |
Sbjct 1868309 TATTGGTATCGATTTGGGTACTACCTACTCTTGTGTAGGTATCTTTCGTGATGATAGAAT 1868368
Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113
|||||||| || || || ||||| ||| | || || ||||| | ||| | ||||| ||
Sbjct 1868369 CGAAATTATCGCGAACGACCAAGGAAACCGTACCACACCATCCTTCGTTGCCTTCACAGA 1868428
Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173
|| || | | | | || ||||| || || |||||| | | || || | ||| ||
Sbjct 1868429 TACCGAGCGTCTGATCGGAGATGCCGCTAAGAATCAAGTCGCCATGAACCCAATCAACAC 1868488
Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAG 550232
| | || ||||| || ||||| ||||| | ||||| | ||| | ||||| || |
Sbjct 1868489 TGTCTTCGATGCGAAGCGTTTGATTGGTCGCAAGTTCGCA-GATGCTGAAGTTCAAGCTG 1868547
Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CT 550291
|||||||||| | || ||| | | || | | | ||||| || ||||| | |
Sbjct 1868548 ATATGAAGCACTTCCCATTCAAGGTCATTGACCGTGCCGGAAAGCCAGTCATTGAGGTCG 1868607
Query 550292 ACTCATGAAGGATCTGTT-AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350
| | | |||| | |||||||| |||||||| |||| || || ||| | || |
Sbjct 1868608 AGT--TCAAGGGAGAGAACAAACAATTCACACCAGAAGAAATCTCTTCCATGATCTTGGT 1868665
Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410
|| |||| | | || || |||| | ||| | || | | || || | ||
Sbjct 1868666 CAAGATGAGAGAGACCGCTGAGGCTTACCTCGGTGGAACTGTCAACAACGCCGTCGTCAC 1868725
Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470
|| ||||| || || | || ||||||||||||||||| || || ||||| | |||||
Sbjct 1868726 AGTCCCAGCTTACTTCACCGATTCACAACGTCAAGCTACCAAGGACGCTGGTCTCATTGC 1868785
Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530
||| ||||| ||||| ||||| ||||| || ||||| || ||||| |||| || || |
Sbjct 1868786 TGGCCTTAACGTTCTCCGTATCATCAACGAGCCTACCGCAGCTGCCATTGCTTACGGTTT 1868845
Query 550531 TGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581
|| || | | || |||| ||| || |||||||| ||| ||| ||
Sbjct 1868846 GGACAAGAAGATCGAGGGTGAACGTAACGTTCTCATCTTCGATCTTGGTGG 1868896
Score = 102 bits (112), Expect = 7e-16
Identities = 156/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
|||||||| || | || | ||| ||||| || |||||||||||| | || |||||
Sbjct 1949560 AGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAAAGGGTTCTG 1949619
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
|| || | ||| ||||| ||||| || | || ||| |||||||| ||||| || ||
Sbjct 1949620 CCGTCCTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCCTCC 1949679
Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435
|| || ||||| ||| |||||| ||||| ||||| | || | || || | ||
Sbjct 1949680 TTGTCCTGAATCTTTGATTTTACATTATCAATGGTATCTG-ACGATTCCACCTCTAATGT 1949738
Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|| || || ||||| | ||| || || || |||||||||
Sbjct 1949739 AATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCATA 1949778
>seq1
Length=3942387
Score = 109 bits (120), Expect = 4e-18
Identities = 118/155 (76%), Gaps = 1/155 (1%)
Strand=Plus/Minus
Query 550379 GTTGGTCAAGAAGTT-ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437
||||| ||||||| | || | || || || ||||| ||||| || || || ||| ||
Sbjct 139565 GTTGGGCAAGAAGGTCACAAAGGCCGTCATCACTGTCCCAGCTTACTTCAACGACAACCA 139506
Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497
|||||||||||| || |||||||| || ||||| ||||| || || ||||| |||||
Sbjct 139505 ACGTCAAGCTACCAAGGATGCTGGTGCCATCGCTGGTCTTAACGTCCTCCGTATCATCAA 139446
Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532
|| ||||| |||||||| |||| || || ||||
Sbjct 139445 CGAGCCTACCGCTGCTGCCATTGCTTACGGTCTTG 139411
>seq44
Length=110725
Score = 86.0 bits (94), Expect = 5e-11
Identities = 97/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | || || || ||||| || || || || ||||||||||||||||| ||||
Sbjct 53765 ATGCCGTCGTTACCGTTCCCGCATACTTCAACGATTCCCAACGTCAAGCTACTAAGGATG 53706
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
|||| | ||||| || | || ||||| | || |||| || || |||||||| || |
Sbjct 53705 CTGGTCAAATTGCCGGTTTGAACGTTCTCAGAGTTGTCAACGAGCCAACTGCTGCCGCTC 53646
Query 550518 TTGCATATGG 550527
| || |||||
Sbjct 53645 TCGCTTATGG 53636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029273471198740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |