Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3 161 8e-34 seq1 109 4e-18 seq44 86.0 5e-11 >seq3 Length=2676204 Score = 161 bits (178), Expect = 8e-34 Identities = 394/591 (67%), Gaps = 6/591 (1%) Strand=Plus/Plus Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053 ||| ||||| ||||| || || || || |||||| ||| | | | ||| || | | Sbjct 1868309 TATTGGTATCGATTTGGGTACTACCTACTCTTGTGTAGGTATCTTTCGTGATGATAGAAT 1868368 Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 |||||||| || || || ||||| ||| | || || ||||| | ||| | ||||| || Sbjct 1868369 CGAAATTATCGCGAACGACCAAGGAAACCGTACCACACCATCCTTCGTTGCCTTCACAGA 1868428 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 || || | | | | || ||||| || || |||||| | | || || | ||| || Sbjct 1868429 TACCGAGCGTCTGATCGGAGATGCCGCTAAGAATCAAGTCGCCATGAACCCAATCAACAC 1868488 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAG 550232 | | || ||||| || ||||| ||||| | ||||| | ||| | ||||| || | Sbjct 1868489 TGTCTTCGATGCGAAGCGTTTGATTGGTCGCAAGTTCGCA-GATGCTGAAGTTCAAGCTG 1868547 Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CT 550291 |||||||||| | || ||| | | || | | | ||||| || ||||| | | Sbjct 1868548 ATATGAAGCACTTCCCATTCAAGGTCATTGACCGTGCCGGAAAGCCAGTCATTGAGGTCG 1868607 Query 550292 ACTCATGAAGGATCTGTT-AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | | | |||| | |||||||| |||||||| |||| || || ||| | || | Sbjct 1868608 AGT--TCAAGGGAGAGAACAAACAATTCACACCAGAAGAAATCTCTTCCATGATCTTGGT 1868665 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 || |||| | | || || |||| | ||| | || | | || || | || Sbjct 1868666 CAAGATGAGAGAGACCGCTGAGGCTTACCTCGGTGGAACTGTCAACAACGCCGTCGTCAC 1868725 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 || ||||| || || | || ||||||||||||||||| || || ||||| | ||||| Sbjct 1868726 AGTCCCAGCTTACTTCACCGATTCACAACGTCAAGCTACCAAGGACGCTGGTCTCATTGC 1868785 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||| ||||| ||||| ||||| ||||| || ||||| || ||||| |||| || || | Sbjct 1868786 TGGCCTTAACGTTCTCCGTATCATCAACGAGCCTACCGCAGCTGCCATTGCTTACGGTTT 1868845 Query 550531 TGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 || || | | || |||| ||| || |||||||| ||| ||| || Sbjct 1868846 GGACAAGAAGATCGAGGGTGAACGTAACGTTCTCATCTTCGATCTTGGTGG 1868896 Score = 102 bits (112), Expect = 7e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| || | || | ||| ||||| || |||||||||||| | || ||||| Sbjct 1949560 AGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAAAGGGTTCTG 1949619 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || || | ||| ||||| ||||| || | || ||| |||||||| ||||| || || Sbjct 1949620 CCGTCCTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCCTCC 1949679 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || || ||||| ||| |||||| ||||| ||||| | || | || || | || Sbjct 1949680 TTGTCCTGAATCTTTGATTTTACATTATCAATGGTATCTG-ACGATTCCACCTCTAATGT 1949738 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || || ||||| | ||| || || || ||||||||| Sbjct 1949739 AATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCATA 1949778 >seq1 Length=3942387 Score = 109 bits (120), Expect = 4e-18 Identities = 118/155 (76%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 550379 GTTGGTCAAGAAGTT-ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437 ||||| ||||||| | || | || || || ||||| ||||| || || || ||| || Sbjct 139565 GTTGGGCAAGAAGGTCACAAAGGCCGTCATCACTGTCCCAGCTTACTTCAACGACAACCA 139506 Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497 |||||||||||| || |||||||| || ||||| ||||| || || ||||| ||||| Sbjct 139505 ACGTCAAGCTACCAAGGATGCTGGTGCCATCGCTGGTCTTAACGTCCTCCGTATCATCAA 139446 Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 || ||||| |||||||| |||| || || |||| Sbjct 139445 CGAGCCTACCGCTGCTGCCATTGCTTACGGTCTTG 139411 >seq44 Length=110725 Score = 86.0 bits (94), Expect = 5e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | || || || ||||| || || || || ||||||||||||||||| |||| Sbjct 53765 ATGCCGTCGTTACCGTTCCCGCATACTTCAACGATTCCCAACGTCAAGCTACTAAGGATG 53706 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| | ||||| || | || ||||| | || |||| || || |||||||| || | Sbjct 53705 CTGGTCAAATTGCCGGTTTGAACGTTCTCAGAGTTGTCAACGAGCCAACTGCTGCCGCTC 53646 Query 550518 TTGCATATGG 550527 | || ||||| Sbjct 53645 TCGCTTATGG 53636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029273471198740