Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq3 174 1e-37
seq44 96.9 2e-14
seq17 87.8 1e-11
>seq3
Length=2676204
Score = 174 bits (192), Expect = 1e-37
Identities = 370/548 (68%), Gaps = 6/548 (1%)
Strand=Plus/Plus
Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391
|||||||| ||||| || ||||| ||| |||||||| | | | | ||| || | |
Sbjct 1868310 ATTGGTATCGATTTGGGTACTACCTACTCTTGTGTAGGTATCTTTCGTGATGATAGAATC 1868369
Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451
||||| || || || |||||||| || | || |||||||| | ||| | || || ||
Sbjct 1868370 GAAATTATCGCGAACGACCAAGGAAACCGTACCACACCATCCTTCGTTGCCTTCACAGAT 1868429
Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511
|| || | ||| || |||||||| ||||| |||||| || || || | || |||
Sbjct 1868430 ACCGAGCGTCTGATCGGAGATGCCGCTAAGAATCAAGTCGCCATGAACCCAATCAACACT 1868489
Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571
| || ||||| || | ||||||||||| || || | ||| | || ||| |||||
Sbjct 1868490 GTCTTCGATGCGAAGCGTTTGATTGGTCGCAAGTTCGCAGATGCTGAAGTTCAAGCTGAT 1868549
Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG--CAA 474629
||| || | || || ||||| || | || || || ||| || || | |
Sbjct 1868550 ATGAAGCACTTCCCATTCAAGGTCATTGACCGTGCCGGAAAGCCAGTCATTGAGGTCGAG 1868609
Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689
| || | || || | |||||||| |||| ||| |||| ||||| ||| | || | ||
Sbjct 1868610 TTCAAG--GGAGAGAACAAACAATTCACACCAGAAGAAATCTCTTCCATGATCTTGGTCA 1868667
Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748
| |||| | | ||||| ||| | || || || | || | | || || | ||
Sbjct 1868668 AGATGAGAGAGACCGCTGAG-GCTTACCTCGGTGGAACTGTCAACAACGCCGTCGTCACA 1868726
Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808
|| ||||| || || | ||||| ||||||||||| || || || || || |||||
Sbjct 1868727 GTCCCAGCTTACTTCACCGATTCACAACGTCAAGCTACCAAGGACGCTGGTCTCATTGCT 1868786
Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868
|| ||||| ||| | ||||| || || || || || ||||| || ||||||| ||| |
Sbjct 1868787 GGCCTTAACGTTCTCCGTATCATCAACGAGCCTACCGCAGCTGCCATTGCTTACGGTTTG 1868846
Query 474869 GATAAGAA 474876
|| |||||
Sbjct 1868847 GACAAGAA 1868854
Score = 113 bits (124), Expect = 3e-19
Identities = 122/162 (75%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||||||||| || | || | || ||||| || || ||| ||||| | || ||
Sbjct 1949556 ACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAAAGGGT 1949615
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|||| || || | ||||||||| ||||| || | |||||||||||||| ||||| ||
Sbjct 1949616 TCTGCCGTCCTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCC 1949675
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712
|||||||| ||||||||| ||| ||| ||||| |||||
Sbjct 1949676 CTCCTTGTCCTGAATCTTTGATTTTACATTATCAATGGTATC 1949717
Score = 111 bits (122), Expect = 1e-18
Identities = 155/218 (71%), Gaps = 12/218 (6%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||| | ||| || | ||||| ||| || || | ||||||||| | || ||
Sbjct 1950012 ACGAAGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATATTATAATCGGAAAGGGT 1950071
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| ||||| |||||||||||||| ||||| | ||||||||| || |||||||| ||
Sbjct 1950072 GCGACCGTCTTCCAGTTGCTTTCCAGCGAAAATCAAACGTTGTTGGTCGGGAGGAATGCC 1950131
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT----- 480725
|||||||||||||||||| || || || || |||| ||||| |
Sbjct 1950132 TTCCTTGTCTTGAATCTTAGACTTAACGTTGTCGAT------GGTGTCTGAAGATTCGAC 1950185
Query 480726 -TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762
|||||||| || || || ||||| |||||||||||||
Sbjct 1950186 CTCAAGGGTGATGGTCTTTCCGGTAAGAGTCTTAACGA 1950223
Score = 100 bits (110), Expect = 2e-15
Identities = 116/154 (75%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
||| ||||||||||| |||||||| ||||||||||||||||| || || || || |||||
Sbjct 1949850 ATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGTGGGATACCCTCCTT 1949909
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735
||||| |||||| || ||| || || ||||| | || | || | ||| || |
Sbjct 1949910 ATCTTGGATCTTTGACTTCACATTGTCGATGGTATCCGATGATTCAACCTCCAA-AGTGA 1949968
Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || || ||||| || ||||| ||||| || ||
Sbjct 1949969 TTGTCTTTCCGGTAAGGGTCTTGACGAAGATCTG 1950002
Score = 89.7 bits (98), Expect = 3e-12
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||||||||| ||||| || ||||| | ||| ||||| || ||||||||||| |||||
Sbjct 1950361 ATCTTCAAGTTGTTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGAGGAATTCCCTCCTT 1950420
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
||| || ||||| |||||| || || || || || | || ||||||||
Sbjct 1950421 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCAACCTCGAGGGTAAT 1950480
Query 480737 AGTTTTACCGGT 480748
||| ||||||||
Sbjct 1950481 AGTCTTACCGGT 1950492
>seq44
Length=110725
Score = 96.9 bits (106), Expect = 2e-14
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || |||| ||||| ||||| || || ||||| ||||||||||| ||||| ||||
Sbjct 53765 ATGCCGTCGTTACCGTTCCCGCATACTTCAACGATTCCCAACGTCAAGCTACTAAGGATG 53706
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| || |||||| ||| | || ||| | | || | || || ||||| || ||||| |
Sbjct 53705 CTGGTCAAATTGCCGGTTTGAACGTTCTCAGAGTTGTCAACGAGCCAACTGCTGCCGCTC 53646
Query 474855 TTGCTTATGGTCTTGATAAGAATTCTGACAA 474885
| ||||||||| | || ||| || |||||
Sbjct 53645 TCGCTTATGGTTTGGAAAAGGATGAGGACAA 53615
>seq17
Length=875485
Score = 87.8 bits (96), Expect = 1e-11
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
||||| | |||||||||||| || || | |||||||||||| ||||||||||| ||||||
Sbjct 658210 TCTTCCAATTGCTTTCCAGCGAAGATCAAACGTTGTTGATCGGGAGGAATTCCCTCCTTG 658151
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737
|| || ||||| |||||| || || || || | | |||||||| ||
Sbjct 658150 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATG 658091
Query 480738 GTTTTACCGGTGAGAGTCTTAACGAA 480763
|| || || || || ||||| |||||
Sbjct 658090 GTCTTGCCCGTAAGGGTCTTGACGAA 658065
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268160926793048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |