Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3 174 1e-37 seq44 96.9 2e-14 seq17 87.8 1e-11 >seq3 Length=2676204 Score = 174 bits (192), Expect = 1e-37 Identities = 370/548 (68%), Gaps = 6/548 (1%) Strand=Plus/Plus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 |||||||| ||||| || ||||| ||| |||||||| | | | | ||| || | | Sbjct 1868310 ATTGGTATCGATTTGGGTACTACCTACTCTTGTGTAGGTATCTTTCGTGATGATAGAATC 1868369 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 ||||| || || || |||||||| || | || |||||||| | ||| | || || || Sbjct 1868370 GAAATTATCGCGAACGACCAAGGAAACCGTACCACACCATCCTTCGTTGCCTTCACAGAT 1868429 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || || | ||| || |||||||| ||||| |||||| || || || | || ||| Sbjct 1868430 ACCGAGCGTCTGATCGGAGATGCCGCTAAGAATCAAGTCGCCATGAACCCAATCAACACT 1868489 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | || ||||| || | ||||||||||| || || | ||| | || ||| ||||| Sbjct 1868490 GTCTTCGATGCGAAGCGTTTGATTGGTCGCAAGTTCGCAGATGCTGAAGTTCAAGCTGAT 1868549 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG--CAA 474629 ||| || | || || ||||| || | || || || ||| || || | | Sbjct 1868550 ATGAAGCACTTCCCATTCAAGGTCATTGACCGTGCCGGAAAGCCAGTCATTGAGGTCGAG 1868609 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | || | || || | |||||||| |||| ||| |||| ||||| ||| | || | || Sbjct 1868610 TTCAAG--GGAGAGAACAAACAATTCACACCAGAAGAAATCTCTTCCATGATCTTGGTCA 1868667 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 | |||| | | ||||| ||| | || || || | || | | || || | || Sbjct 1868668 AGATGAGAGAGACCGCTGAG-GCTTACCTCGGTGGAACTGTCAACAACGCCGTCGTCACA 1868726 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || ||||| || || | ||||| ||||||||||| || || || || || ||||| Sbjct 1868727 GTCCCAGCTTACTTCACCGATTCACAACGTCAAGCTACCAAGGACGCTGGTCTCATTGCT 1868786 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 || ||||| ||| | ||||| || || || || || ||||| || ||||||| ||| | Sbjct 1868787 GGCCTTAACGTTCTCCGTATCATCAACGAGCCTACCGCAGCTGCCATTGCTTACGGTTTG 1868846 Query 474869 GATAAGAA 474876 || ||||| Sbjct 1868847 GACAAGAA 1868854 Score = 113 bits (124), Expect = 3e-19 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || | || | || ||||| || || ||| ||||| | || || Sbjct 1949556 ACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAAAGGGT 1949615 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 |||| || || | ||||||||| ||||| || | |||||||||||||| ||||| || Sbjct 1949616 TCTGCCGTCCTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCC 1949675 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 |||||||| ||||||||| ||| ||| ||||| ||||| Sbjct 1949676 CTCCTTGTCCTGAATCTTTGATTTTACATTATCAATGGTATC 1949717 Score = 111 bits (122), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 12/218 (6%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| | ||| || | ||||| ||| || || | ||||||||| | || || Sbjct 1950012 ACGAAGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATATTATAATCGGAAAGGGT 1950071 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||||| |||||||||||||| ||||| | ||||||||| || |||||||| || Sbjct 1950072 GCGACCGTCTTCCAGTTGCTTTCCAGCGAAAATCAAACGTTGTTGGTCGGGAGGAATGCC 1950131 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT----- 480725 |||||||||||||||||| || || || || |||| ||||| | Sbjct 1950132 TTCCTTGTCTTGAATCTTAGACTTAACGTTGTCGAT------GGTGTCTGAAGATTCGAC 1950185 Query 480726 -TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 |||||||| || || || ||||| ||||||||||||| Sbjct 1950186 CTCAAGGGTGATGGTCTTTCCGGTAAGAGTCTTAACGA 1950223 Score = 100 bits (110), Expect = 2e-15 Identities = 116/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| ||||||||||| |||||||| ||||||||||||||||| || || || || ||||| Sbjct 1949850 ATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGTGGGATACCCTCCTT 1949909 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 ||||| |||||| || ||| || || ||||| | || | || | ||| || | Sbjct 1949910 ATCTTGGATCTTTGACTTCACATTGTCGATGGTATCCGATGATTCAACCTCCAA-AGTGA 1949968 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || ||||| || ||||| ||||| || || Sbjct 1949969 TTGTCTTTCCGGTAAGGGTCTTGACGAAGATCTG 1950002 Score = 89.7 bits (98), Expect = 3e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||||||||| ||||| || ||||| | ||| ||||| || ||||||||||| ||||| Sbjct 1950361 ATCTTCAAGTTGTTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGAGGAATTCCCTCCTT 1950420 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| |||||| || || || || || | || |||||||| Sbjct 1950421 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCAACCTCGAGGGTAAT 1950480 Query 480737 AGTTTTACCGGT 480748 ||| |||||||| Sbjct 1950481 AGTCTTACCGGT 1950492 >seq44 Length=110725 Score = 96.9 bits (106), Expect = 2e-14 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || |||| ||||| ||||| || || ||||| ||||||||||| ||||| |||| Sbjct 53765 ATGCCGTCGTTACCGTTCCCGCATACTTCAACGATTCCCAACGTCAAGCTACTAAGGATG 53706 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || |||||| ||| | || ||| | | || | || || ||||| || ||||| | Sbjct 53705 CTGGTCAAATTGCCGGTTTGAACGTTCTCAGAGTTGTCAACGAGCCAACTGCTGCCGCTC 53646 Query 474855 TTGCTTATGGTCTTGATAAGAATTCTGACAA 474885 | ||||||||| | || ||| || ||||| Sbjct 53645 TCGCTTATGGTTTGGAAAAGGATGAGGACAA 53615 >seq17 Length=875485 Score = 87.8 bits (96), Expect = 1e-11 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| | |||||||||||| || || | |||||||||||| ||||||||||| |||||| Sbjct 658210 TCTTCCAATTGCTTTCCAGCGAAGATCAAACGTTGTTGATCGGGAGGAATTCCCTCCTTG 658151 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || || ||||| |||||| || || || || | | |||||||| || Sbjct 658150 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATG 658091 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAA 480763 || || || || || ||||| ||||| Sbjct 658090 GTCTTGCCCGTAAGGGTCTTGACGAA 658065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268160926793048