Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3 100 5e-16 seq18 93.3 8e-14 >seq3 Length=2676204 Score = 100 bits (110), Expect = 5e-16 Identities = 167/238 (70%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCT--CTTTAGAAATAT 193182 || ||| |||||| | | || || |||| ||||| || || | |||| ||| ||| Sbjct 1949542 ATCTATTGACCACCACGAAGACGGAGCACCAAGTGCAAGGT-GCTTTCCTTTTGAA-TAT 1949599 Query 193183 TATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTT 193242 | || || || | ||||| || || ||||| ||||| ||||| || |||| |||| Sbjct 1949600 TGTAATCCGAAAGGGTTCTGCCGTCCTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTT 1949659 Query 193243 GATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGG 193302 ||||||| || || || || || || || || || | ||||| ||| ||| ||||| | Sbjct 1949660 GATCAGGTGGAATGCCCTCCTTGTCCTGAATCTTTGATTTTACATTATCAATGGTATCTG 1949719 Query 193303 AAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || || |||| || || || || || || | || || ||||| |||||||| Sbjct 1949720 ACGATTCCACCTCTAATGTAATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1949777 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | || || |||| || | |||| |||||| || || Sbjct 1950280 AATTTGCATACCACCACGAAGTCTGAGGACCAAGTGGAGAGTAGACTCTTTCTGGATGTT 1950339 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || || | | ||| || | |||||||||||| ||||| || | |||||| Sbjct 1950340 GTAGTCACTCAAGGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAAACGCTGTTG 1950399 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| ||||| || || || || || |||| || | ||| || || ||| Sbjct 1950400 GTCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCT 1950459 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGT 193336 |||||||| || || || ||||| ||||| || Sbjct 1950460 GGACTCAACCTCGAGGGTAATAGTCTTACCGGT 1950492 >seq18 Length=865119 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| |||||||| || || |||| |||||| || || || ||||| || || Sbjct 543402 ATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTT 543343 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || || |||| || | ||| || || |||||||||||||| || || || || Sbjct 543342 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGAT 543283 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || || ||||| Sbjct 543282 GGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 543247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899649609340320