Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq3 100 5e-16
seq18 93.3 8e-14
>seq3
Length=2676204
Score = 100 bits (110), Expect = 5e-16
Identities = 167/238 (70%), Gaps = 4/238 (2%)
Strand=Plus/Plus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCT--CTTTAGAAATAT 193182
|| ||| |||||| | | || || |||| ||||| || || | |||| ||| |||
Sbjct 1949542 ATCTATTGACCACCACGAAGACGGAGCACCAAGTGCAAGGT-GCTTTCCTTTTGAA-TAT 1949599
Query 193183 TATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTT 193242
| || || || | ||||| || || ||||| ||||| ||||| || |||| ||||
Sbjct 1949600 TGTAATCCGAAAGGGTTCTGCCGTCCTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTT 1949659
Query 193243 GATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGG 193302
||||||| || || || || || || || || || | ||||| ||| ||| ||||| |
Sbjct 1949660 GATCAGGTGGAATGCCCTCCTTGTCCTGAATCTTTGATTTTACATTATCAATGGTATCTG 1949719
Query 193303 AAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
| || || || |||| || || || || || || | || || ||||| ||||||||
Sbjct 1949720 ACGATTCCACCTCTAATGTAATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1949777
Score = 91.5 bits (100), Expect = 3e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||||| |||||||| | | || || |||| || | |||| |||||| || ||
Sbjct 1950280 AATTTGCATACCACCACGAAGTCTGAGGACCAAGTGGAGAGTAGACTCTTTCTGGATGTT 1950339
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
||||| || || | | ||| || | |||||||||||| ||||| || | ||||||
Sbjct 1950340 GTAGTCACTCAAGGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAAACGCTGTTG 1950399
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
|| ||||| ||||| || || || || || |||| || | ||| || || |||
Sbjct 1950400 GTCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCT 1950459
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGT 193336
|||||||| || || || ||||| ||||| ||
Sbjct 1950460 GGACTCAACCTCGAGGGTAATAGTCTTACCGGT 1950492
>seq18
Length=865119
Score = 93.3 bits (102), Expect = 8e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| || | ||| |||||||| || || |||| |||||| || || || ||||| || ||
Sbjct 543402 ATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTT 543343
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
|| || || |||| || | ||| || || |||||||||||||| || || || ||
Sbjct 543342 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGAT 543283
Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| || || || || || || || || |||||
Sbjct 543282 GGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 543247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899649609340320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |