Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq38 147 6e-30 seq4 138 3e-27 seq3 104 7e-17 >seq38 Length=269250 Score = 147 bits (162), Expect = 6e-30 Identities = 414/629 (66%), Gaps = 15/629 (2%) Strand=Plus/Minus Query 155910 ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC 155969 ||||||| ||| |||| |||| ||| | || ||||| || || | ||| Sbjct 55897 ACACGCTTCATGAATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACT 55838 Query 155970 TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGC 156029 || || | ||| ||||| || ||||| || | ||| || || ||| | ||| |||| Sbjct 55837 TCTTCTTTGCCATGATTTTTGCGTAGATCAAGGAACTCAAAAACATCCGCATGCCATGGC 55778 Query 156030 TCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCA 156086 || || || | |||||| |||| | ||| ||||| ||||| ||||| | ||| Sbjct 55777 TCAAGGTAAACAGCAAAGGCACCAGGACGCTTATTACCACCTTGATCAACATATCTGGCA 55718 Query 156087 GTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGA 156146 || || ||||| || | |||||||||| ||||| || || | || ||||| ||| | Sbjct 55717 GTGTTGTTGAAAACTCGGAGCATAGGAACGATACCGTTAGAGTTTCCGTTGGTACCGGCA 55658 Query 156147 AT--ATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT- 156203 || ||||| |||| | || | ||||| | || ||||||||||| | ||| Sbjct 55657 ATGTATGCG--CCAGTAGCACGGATTCGGTGAATGTTGAGACCAATACCACCGG--CATT 55602 Query 156204 -TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTC 156262 || || || ||| || ||| | ||||| | ||||||| |||||| || || | Sbjct 55601 CTTTGAGATCATAGCACAAATCTTCAAAGTATCGTAAATACCATCAATACTGTCCTCCTT 55542 Query 156263 CA--TTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGT 156320 || | |||| || |||| || | ||| | | |||| || || || ||| ||| Sbjct 55541 CATGTCGATA--AGGAAGCATGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGT 55484 Query 156321 GTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTC 156380 || || | ||||| | || ||||| || ||||| | | |||||| || || | Sbjct 55483 GTTGGCGAGGCATGTGTGAAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTT 55424 Query 156381 TCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCT 156440 |||| || | |||||||||| | | || | ||| ||| || || ||||| ||| Sbjct 55423 TCAATATCATCACCGTGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCT 55364 Query 156441 ACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAA 156500 ||| ||||||| || |||||||||| || || |||||||| || || || || Sbjct 55363 GCAACTTTGCCATCAAGACGTAGAAGGTATGAACGCTCGAGAGTTTTGAATCCAAAGTAT 55304 Query 156501 TCAAACAGAAAATCACGGTTGTAATCAAT 156529 | | | ||||| |||| ||| |||| Sbjct 55303 TGATAGTTGAAATCTCGGTCGTAGACAAT 55275 >seq4 Length=2630524 Score = 138 bits (152), Expect = 3e-27 Identities = 390/591 (66%), Gaps = 20/591 (3%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || || || ||| ||| | ||| || ||| ||||||| || | ||| |||| | Sbjct 1349360 ATGAGCCCGCAAATATCACAGATATGAACTCTGAAAGCATCCGAAACCTCAAATAGTCTC 1349301 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| | ||||||||| ||||||||||||||||| ||||| || |||||| Sbjct 1349300 TCCTTCAAGAAAGCACTTGCACCGTGCGAAATCATACAATCACGTTCCATCTCTCCGAAA 1349241 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || ||||||||||| | || | ||| ||| ||||||| | || || | | ||| Sbjct 1349240 CGGAGACCACCATCTCTGGCACGACCTTCGACAGGCTGTCTGGTCAGGATCTGAACGGGA 1349181 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 || ||| ||| ||| |||||||| |||||||| | ||| ||||| ||| | Sbjct 1349180 CCTCTGGCACGGGCATGGATCTTATCATCGACCATATGGCGCAAACGTTGGTAATATGTG 1349121 Query 251647 GGACCGATGAAGA--TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTT 251704 || || | ||||| || | | ||| | ||||| || | | ||||| | | Sbjct 1349120 GGGCCAAGGAAGACTTGGGCCA--TCATCTTACGGCCAGTATGACCATGGTACATGATCT 1349063 Query 251705 CGTTTCCATTAGATTCATAACCAAGT---TTCTGTAGCTCTGAAGCAATATCACCAATCT 251761 | || ||| | |||||| || |||||| ||| | ||| || Sbjct 1349062 CAAAACCGCGAGAGTGGTAACCATGTGCACGGAGTAGCTTGGAAACTGAATCGACA---G 1349006 Query 251762 TGAATTTGCTAAAACTGGTG--CCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCC 251819 ||| | | |||| ||||| | || || | |||||| || | | || || | Sbjct 1349005 TGACCTCGGTAAA--TGGTGTAGCATCGCCCTCAAGACCACGCAGAGTAGAAACCTTACT 1348948 Query 251820 TAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGAT 251879 || | ||| ||| || || || ||||||||| ||||| || || |||||||| Sbjct 1348947 CAATTGACACTCGATCAAATGTGCAATTGTCATACGAGATGGAATGGCGTGAGGATTGAT 1348888 Query 251880 GATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGT 251938 ||||| ||||| | ||| || |||||| |||||||||| || | ||| |||| Sbjct 1348887 GATGAGATCGGGAACAACTCCCTCTCTAGTGAACGGCATATCCTGTTGC---ATATATGT 1348831 Query 251939 --TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | || || |||||||||||||||||||| ||| || || |||||||| Sbjct 1348830 AATACCGATGGTTCCCTTTTGTCCGTGACGTGAAGCAAATTTGTCACCAAT 1348780 >seq3 Length=2676204 Score = 104 bits (114), Expect = 7e-17 Identities = 200/293 (68%), Gaps = 9/293 (3%) Strand=Plus/Plus Query 288937 TTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAA 288996 || || |||||||| || ||||||||||| || || ||| | |||||| ||| | Sbjct 1049930 TTGAACCCATCCATCTCAGTCAAAATTTGATTGAGCGTAGCTTCACGTTCATCGTTTCCA 1049989 Query 288997 CCTCTTGAATCACCCGAA---TCGCTCCtttttttACCAACAGCATCAATTTCGTCAATG 289053 || |||| ||||| | || | || || | |||||| || || |||||| Sbjct 1049990 CCA----AATC--CCGAAGACTTGCCACGAGACTTTCCGATAGCATCGATCTCATCAATG 1050043 Query 289054 AAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCT 289113 || || | ||| |||| | | | ||| || || || || | |||| || | ||||| Sbjct 1050044 AATATAATACATGGAGTACTCTTTCTTGCCATGGCGAAAAGATCTCGAACTCTCGATGCA 1050103 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTT 289173 |||| |||||| |||| |||||||| |||||| | || || ||||| ||| Sbjct 1050104 CCAACGCCAACAAACATCTCTACAAACTCAGAACCACTGACGCTAAAGAATGGTACTCCG 1050163 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCC 289226 | |||||| ||| |||| | || || | ||| ||||| || ||||||||||| Sbjct 1050164 GATTCGCCAGCTGTTGCCTTTGCTAGCAATGTTTTACCAGTACCAGGTGGTCC 1050216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471809566635562