Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq38 147 6e-30
seq4 138 3e-27
seq3 104 7e-17
>seq38
Length=269250
Score = 147 bits (162), Expect = 6e-30
Identities = 414/629 (66%), Gaps = 15/629 (2%)
Strand=Plus/Minus
Query 155910 ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC 155969
||||||| ||| |||| |||| ||| | || ||||| || || | |||
Sbjct 55897 ACACGCTTCATGAATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACT 55838
Query 155970 TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGC 156029
|| || | ||| ||||| || ||||| || | ||| || || ||| | ||| ||||
Sbjct 55837 TCTTCTTTGCCATGATTTTTGCGTAGATCAAGGAACTCAAAAACATCCGCATGCCATGGC 55778
Query 156030 TCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCA 156086
|| || || | |||||| |||| | ||| ||||| ||||| ||||| | |||
Sbjct 55777 TCAAGGTAAACAGCAAAGGCACCAGGACGCTTATTACCACCTTGATCAACATATCTGGCA 55718
Query 156087 GTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGA 156146
|| || ||||| || | |||||||||| ||||| || || | || ||||| ||| |
Sbjct 55717 GTGTTGTTGAAAACTCGGAGCATAGGAACGATACCGTTAGAGTTTCCGTTGGTACCGGCA 55658
Query 156147 AT--ATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT- 156203
|| ||||| |||| | || | ||||| | || ||||||||||| | |||
Sbjct 55657 ATGTATGCG--CCAGTAGCACGGATTCGGTGAATGTTGAGACCAATACCACCGG--CATT 55602
Query 156204 -TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTC 156262
|| || || ||| || ||| | ||||| | ||||||| |||||| || || |
Sbjct 55601 CTTTGAGATCATAGCACAAATCTTCAAAGTATCGTAAATACCATCAATACTGTCCTCCTT 55542
Query 156263 CA--TTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGT 156320
|| | |||| || |||| || | ||| | | |||| || || || ||| |||
Sbjct 55541 CATGTCGATA--AGGAAGCATGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGT 55484
Query 156321 GTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTC 156380
|| || | ||||| | || ||||| || ||||| | | |||||| || || |
Sbjct 55483 GTTGGCGAGGCATGTGTGAAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTT 55424
Query 156381 TCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCT 156440
|||| || | |||||||||| | | || | ||| ||| || || ||||| |||
Sbjct 55423 TCAATATCATCACCGTGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCT 55364
Query 156441 ACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAA 156500
||| ||||||| || |||||||||| || || |||||||| || || || ||
Sbjct 55363 GCAACTTTGCCATCAAGACGTAGAAGGTATGAACGCTCGAGAGTTTTGAATCCAAAGTAT 55304
Query 156501 TCAAACAGAAAATCACGGTTGTAATCAAT 156529
| | | ||||| |||| ||| ||||
Sbjct 55303 TGATAGTTGAAATCTCGGTCGTAGACAAT 55275
>seq4
Length=2630524
Score = 138 bits (152), Expect = 3e-27
Identities = 390/591 (66%), Gaps = 20/591 (3%)
Strand=Plus/Minus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|| || || || ||| ||| | ||| || ||| ||||||| || | ||| |||| |
Sbjct 1349360 ATGAGCCCGCAAATATCACAGATATGAACTCTGAAAGCATCCGAAACCTCAAATAGTCTC 1349301
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| ||| | ||||||||| ||||||||||||||||| ||||| || ||||||
Sbjct 1349300 TCCTTCAAGAAAGCACTTGCACCGTGCGAAATCATACAATCACGTTCCATCTCTCCGAAA 1349241
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586
|| ||||||||||| | || | ||| ||| ||||||| | || || | | |||
Sbjct 1349240 CGGAGACCACCATCTCTGGCACGACCTTCGACAGGCTGTCTGGTCAGGATCTGAACGGGA 1349181
Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646
|| ||| ||| ||| |||||||| |||||||| | ||| ||||| ||| |
Sbjct 1349180 CCTCTGGCACGGGCATGGATCTTATCATCGACCATATGGCGCAAACGTTGGTAATATGTG 1349121
Query 251647 GGACCGATGAAGA--TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTT 251704
|| || | ||||| || | | ||| | ||||| || | | ||||| | |
Sbjct 1349120 GGGCCAAGGAAGACTTGGGCCA--TCATCTTACGGCCAGTATGACCATGGTACATGATCT 1349063
Query 251705 CGTTTCCATTAGATTCATAACCAAGT---TTCTGTAGCTCTGAAGCAATATCACCAATCT 251761
| || ||| | |||||| || |||||| ||| | ||| ||
Sbjct 1349062 CAAAACCGCGAGAGTGGTAACCATGTGCACGGAGTAGCTTGGAAACTGAATCGACA---G 1349006
Query 251762 TGAATTTGCTAAAACTGGTG--CCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCC 251819
||| | | |||| ||||| | || || | |||||| || | | || || |
Sbjct 1349005 TGACCTCGGTAAA--TGGTGTAGCATCGCCCTCAAGACCACGCAGAGTAGAAACCTTACT 1348948
Query 251820 TAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGAT 251879
|| | ||| ||| || || || ||||||||| ||||| || || ||||||||
Sbjct 1348947 CAATTGACACTCGATCAAATGTGCAATTGTCATACGAGATGGAATGGCGTGAGGATTGAT 1348888
Query 251880 GATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGT 251938
||||| ||||| | ||| || |||||| |||||||||| || | ||| ||||
Sbjct 1348887 GATGAGATCGGGAACAACTCCCTCTCTAGTGAACGGCATATCCTGTTGC---ATATATGT 1348831
Query 251939 --TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
| || || |||||||||||||||||||| ||| || || ||||||||
Sbjct 1348830 AATACCGATGGTTCCCTTTTGTCCGTGACGTGAAGCAAATTTGTCACCAAT 1348780
>seq3
Length=2676204
Score = 104 bits (114), Expect = 7e-17
Identities = 200/293 (68%), Gaps = 9/293 (3%)
Strand=Plus/Plus
Query 288937 TTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAA 288996
|| || |||||||| || ||||||||||| || || ||| | |||||| ||| |
Sbjct 1049930 TTGAACCCATCCATCTCAGTCAAAATTTGATTGAGCGTAGCTTCACGTTCATCGTTTCCA 1049989
Query 288997 CCTCTTGAATCACCCGAA---TCGCTCCtttttttACCAACAGCATCAATTTCGTCAATG 289053
|| |||| ||||| | || | || || | |||||| || || ||||||
Sbjct 1049990 CCA----AATC--CCGAAGACTTGCCACGAGACTTTCCGATAGCATCGATCTCATCAATG 1050043
Query 289054 AAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCT 289113
|| || | ||| |||| | | | ||| || || || || | |||| || | |||||
Sbjct 1050044 AATATAATACATGGAGTACTCTTTCTTGCCATGGCGAAAAGATCTCGAACTCTCGATGCA 1050103
Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTT 289173
|||| |||||| |||| |||||||| |||||| | || || ||||| |||
Sbjct 1050104 CCAACGCCAACAAACATCTCTACAAACTCAGAACCACTGACGCTAAAGAATGGTACTCCG 1050163
Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCC 289226
| |||||| ||| |||| | || || | ||| ||||| || |||||||||||
Sbjct 1050164 GATTCGCCAGCTGTTGCCTTTGCTAGCAATGTTTTACCAGTACCAGGTGGTCC 1050216
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471809566635562
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |