Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq38 131 2e-25
seq18 127 2e-24
seq3 123 2e-23
seq17 95.1 1e-14
>seq38
Length=269250
Score = 131 bits (144), Expect = 2e-25
Identities = 432/664 (65%), Gaps = 27/664 (4%)
Strand=Plus/Minus
Query 139358 GACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACA 139417
|||| | || || |||||||| | ||| | || ||| | || ||| ||||||| |
Sbjct 55941 GACATTCGTTGGGGCACATGAGAGTCCAATCCCCATTCTTTTCAACACGCTTCATGAATA 55882
Query 139418 GATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGC-----CTTCTTATCTTCCGAACC 139472
|||| ||||||||||| ||| | | | |||||| || |||||| | | || |
Sbjct 55881 GATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCTTTGCC--ATG 55824
Query 139473 CATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGAT 139532
| || ||| | | |||||| |||||||| || || |||||||| || || || |
Sbjct 55823 ATTTTTGCGT---AGATCAAGGAACTCAAAAACATCCGCATGCCATGGCTCAAGGTAAAC 55767
Query 139533 GGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAA 139589
|| | || || || || ||||||||||| || | || ||| || |||||
Sbjct 55766 AGCAAAGGCACCAGGACGCTTATTACCACCTTGATCAACATATCTGGCAGTGTTGTTGAA 55707
Query 139590 TACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGT----GCTACGGATGGGAC 139645
|| || | ||| || | | |||| | | |||||||||| || | | ||| | |
Sbjct 55706 AACTCGGAGCATAGGAACGATACCGTTAGAGTTTCCGTTGGTACCGGCAATGTATGCGCC 55647
Query 139646 TGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTA 139705
|| ||| |||| || | |||| || || || ||| || || || || |
Sbjct 55646 AGT----AGCACGGATTCGGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCA 55591
Query 139706 AAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCA 139765
| | ||| || || ||||| ||||| || ||||| |||| ||| || |
Sbjct 55590 TAGCACAAATCTTCAAAGTATCGTAAATACCATCAATACTGTCCTCCTTCATGTCGATAA 55531
Query 139766 GAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGT 139825
| |||||||| |||||||| | | || || || || | || || || || || |
Sbjct 55530 GGAAGCATGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGCGAGGCAT 55471
Query 139826 GCGTGAAC-ATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTT 139884
| ||||| | |||||| |||||||| | ||| |||||||| || || |||||||
Sbjct 55470 GTGTGAAGTACTTGTTT-GACATCAAGTTGTATGTTTCGATAGCACTTTCAATATCATCA 55412
Query 139885 CCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCC 139944
||||| ||||| || | || ||||| | ||| ||||| ||||| || || |||
Sbjct 55411 CCGTGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTTTGCCA 55352
Query 139945 TCGAtttttttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGA 140002
|| | | || || | || ||| || || ||| | |||||||| ||||||||
Sbjct 55351 TCAAGACGTAGAAGGTATGAACG--CTCGAGAGTTTTGAATCCAAAGTATTGATAGTTGA 55294
Query 140003 AATC 140006
||||
Sbjct 55293 AATC 55290
>seq18
Length=865119
Score = 127 bits (140), Expect = 2e-24
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || ||||| || || ||||| || || | ||
Sbjct 543247 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCC 543306
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || ||||| || ||||| |||
Sbjct 543307 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCCGACCAA 543366
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||||||| ||||| || || || || ||| | | | | || ||||| |||
Sbjct 543367 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTTTCCGATTACAAC 543426
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
|| |||||||| || || || ||||||||||| ||
Sbjct 543427 ATCCAAAAGGAGTCCACTCTTCACTTGGTGTTACG 543461
>seq3
Length=2676204
Score = 123 bits (136), Expect = 2e-23
Identities = 156/211 (74%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || ||||| || || || || | || || ||| | |
Sbjct 1950005 ATGCAGATCTTCGTCAAGACCCTTACCGGAAAGACAATCACTTTGGAGGTTGAATCATCG 1949946
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||||||||| || || || || || |||||||||
Sbjct 1949945 GATACCATCGACAATGTGAAGTCAAAGATCCAAGATAAGGAGGGTATCCCACCCGATCAA 1949886
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881
|||||| | |||||||| || || || || |||||| ||| | || | || ||||| |
Sbjct 1949885 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGTCGT-ACACTT-TCGGATTACA 1949828
Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912
||||||||||||||||||| |||| |||||
Sbjct 1949827 ACATTCAAAAGGAATCGACTTTACATTTGGT 1949797
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| |||||| | || || | || || || || ||||| | || || ||| | |
Sbjct 1949777 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATTACATTAGAGGTGGAATCGTCA 1949718
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | |||||| |||||| || ||||| || || || || || ||||||
Sbjct 1949717 GATACCATTGATAATGTAAAATCAAAGATTCAGGACAAGGAGGGCATTCCACCTGATCAA 1949658
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||||| ||||||||||| || || || ||||||| |||| | | || ||||| ||
Sbjct 1949657 CAACGATTGATCTTTGCAGGAAAGCAATTGGAGGACGGCAGAACCCTTTCGGATTACAAT 1949598
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913
|||||||||||| || | |||||||||
Sbjct 1949597 ATTCAAAAGGAAAGCACCTTGCACTTGGTG 1949568
Score = 109 bits (120), Expect = 5e-19
Identities = 144/197 (73%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 24717 TTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-A 24775
|||| || || ||||| || || || || || || || ||| | | ||||| | || |
Sbjct 1950220 TTAAGACTCTTACCGGAAAGACCATCACCCTTGAGGTCGAATCTTCAGACACCATCGACA 1950161
Query 24776 ACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATC 24835
||| ||| | || ||| |||||||| ||||| || |||||||| ||||||||||||||
Sbjct 1950160 ACGTTAAGTCTAA-GATTCAAGACAAGGAAGGCATTCCTCCCGACCAACAACGTTTGATT 1950102
Query 24836 TTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAA 24895
|| || || || || ||||| || | | | | || |||||||| || || |||||
Sbjct 1950101 TTCGCTGGAAAGCAACTGGAAGACGGTCGCACCCTTTCCGATTATAATATCCAGAAGGAG 1950042
Query 24896 TCGACACTACACTTGGT 24912
|| || || ||||||||
Sbjct 1950041 TCTACCCTTCACTTGGT 1950025
>seq17
Length=875485
Score = 95.1 bits (104), Expect = 1e-14
Identities = 126/175 (72%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778
|| || || || || || || || || || || || || || ||||||| | || |
Sbjct 658071 AAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAAT 658130
Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838
|| || |||||||| ||||| || ||||| ||||||||||||||||||||||||||
Sbjct 658131 GTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCCGATCAACAACGTTTGATCTTC 658190
Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893
|| || || || |||| || | | | |||||||| ||||| |||||||
Sbjct 658191 GCTGGAAAGCAATTGGAAGACGGACGTACTCTCTCAGATTACAACATCCAAAAGG 658245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449895204295280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |