Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq38 131 2e-25 seq18 127 2e-24 seq3 123 2e-23 seq17 95.1 1e-14 >seq38 Length=269250 Score = 131 bits (144), Expect = 2e-25 Identities = 432/664 (65%), Gaps = 27/664 (4%) Strand=Plus/Minus Query 139358 GACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACA 139417 |||| | || || |||||||| | ||| | || ||| | || ||| ||||||| | Sbjct 55941 GACATTCGTTGGGGCACATGAGAGTCCAATCCCCATTCTTTTCAACACGCTTCATGAATA 55882 Query 139418 GATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGC-----CTTCTTATCTTCCGAACC 139472 |||| ||||||||||| ||| | | | |||||| || |||||| | | || | Sbjct 55881 GATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCTTTGCC--ATG 55824 Query 139473 CATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGAT 139532 | || ||| | | |||||| |||||||| || || |||||||| || || || | Sbjct 55823 ATTTTTGCGT---AGATCAAGGAACTCAAAAACATCCGCATGCCATGGCTCAAGGTAAAC 55767 Query 139533 GGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAA 139589 || | || || || || ||||||||||| || | || ||| || ||||| Sbjct 55766 AGCAAAGGCACCAGGACGCTTATTACCACCTTGATCAACATATCTGGCAGTGTTGTTGAA 55707 Query 139590 TACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGT----GCTACGGATGGGAC 139645 || || | ||| || | | |||| | | |||||||||| || | | ||| | | Sbjct 55706 AACTCGGAGCATAGGAACGATACCGTTAGAGTTTCCGTTGGTACCGGCAATGTATGCGCC 55647 Query 139646 TGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTA 139705 || ||| |||| || | |||| || || || ||| || || || || | Sbjct 55646 AGT----AGCACGGATTCGGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCA 55591 Query 139706 AAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCA 139765 | | ||| || || ||||| ||||| || ||||| |||| ||| || | Sbjct 55590 TAGCACAAATCTTCAAAGTATCGTAAATACCATCAATACTGTCCTCCTTCATGTCGATAA 55531 Query 139766 GAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGT 139825 | |||||||| |||||||| | | || || || || | || || || || || | Sbjct 55530 GGAAGCATGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGCGAGGCAT 55471 Query 139826 GCGTGAAC-ATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTT 139884 | ||||| | |||||| |||||||| | ||| |||||||| || || ||||||| Sbjct 55470 GTGTGAAGTACTTGTTT-GACATCAAGTTGTATGTTTCGATAGCACTTTCAATATCATCA 55412 Query 139885 CCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCC 139944 ||||| ||||| || | || ||||| | ||| ||||| ||||| || || ||| Sbjct 55411 CCGTGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTTTGCCA 55352 Query 139945 TCGAtttttttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGA 140002 || | | || || | || ||| || || ||| | |||||||| |||||||| Sbjct 55351 TCAAGACGTAGAAGGTATGAACG--CTCGAGAGTTTTGAATCCAAAGTATTGATAGTTGA 55294 Query 140003 AATC 140006 |||| Sbjct 55293 AATC 55290 >seq18 Length=865119 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || ||||| || || ||||| || || | || Sbjct 543247 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCC 543306 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || ||||| || ||||| ||| Sbjct 543307 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCCGACCAA 543366 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| ||||| || || || || ||| | | | | || ||||| ||| Sbjct 543367 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTTTCCGATTACAAC 543426 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || |||||||| || || || ||||||||||| || Sbjct 543427 ATCCAAAAGGAGTCCACTCTTCACTTGGTGTTACG 543461 >seq3 Length=2676204 Score = 123 bits (136), Expect = 2e-23 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || | || || ||| | | Sbjct 1950005 ATGCAGATCTTCGTCAAGACCCTTACCGGAAAGACAATCACTTTGGAGGTTGAATCATCG 1949946 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||| || || || || || ||||||||| Sbjct 1949945 GATACCATCGACAATGTGAAGTCAAAGATCCAAGATAAGGAGGGTATCCCACCCGATCAA 1949886 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 |||||| | |||||||| || || || || |||||| ||| | || | || ||||| | Sbjct 1949885 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGTCGT-ACACTT-TCGGATTACA 1949828 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||||||||||||||||| |||| ||||| Sbjct 1949827 ACATTCAAAAGGAATCGACTTTACATTTGGT 1949797 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | || || || || ||||| | || || ||| | | Sbjct 1949777 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATTACATTAGAGGTGGAATCGTCA 1949718 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | |||||| |||||| || ||||| || || || || || |||||| Sbjct 1949717 GATACCATTGATAATGTAAAATCAAAGATTCAGGACAAGGAGGGCATTCCACCTGATCAA 1949658 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||||||| || || || ||||||| |||| | | || ||||| || Sbjct 1949657 CAACGATTGATCTTTGCAGGAAAGCAATTGGAGGACGGCAGAACCCTTTCGGATTACAAT 1949598 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||||||||||| || | ||||||||| Sbjct 1949597 ATTCAAAAGGAAAGCACCTTGCACTTGGTG 1949568 Score = 109 bits (120), Expect = 5e-19 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 24717 TTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-A 24775 |||| || || ||||| || || || || || || || ||| | | ||||| | || | Sbjct 1950220 TTAAGACTCTTACCGGAAAGACCATCACCCTTGAGGTCGAATCTTCAGACACCATCGACA 1950161 Query 24776 ACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATC 24835 ||| ||| | || ||| |||||||| ||||| || |||||||| |||||||||||||| Sbjct 1950160 ACGTTAAGTCTAA-GATTCAAGACAAGGAAGGCATTCCTCCCGACCAACAACGTTTGATT 1950102 Query 24836 TTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAA 24895 || || || || || ||||| || | | | | || |||||||| || || ||||| Sbjct 1950101 TTCGCTGGAAAGCAACTGGAAGACGGTCGCACCCTTTCCGATTATAATATCCAGAAGGAG 1950042 Query 24896 TCGACACTACACTTGGT 24912 || || || |||||||| Sbjct 1950041 TCTACCCTTCACTTGGT 1950025 >seq17 Length=875485 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || || || || || || || || || || || ||||||| | || | Sbjct 658071 AAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAAT 658130 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| || ||||| |||||||||||||||||||||||||| Sbjct 658131 GTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCCGATCAACAACGTTTGATCTTC 658190 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893 || || || || |||| || | | | |||||||| ||||| ||||||| Sbjct 658191 GCTGGAAAGCAATTGGAAGACGGACGTACTCTCTCAGATTACAACATCCAAAAGG 658245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895204295280