Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq18 129 4e-25 seq3 105 4e-18 seq17 91.5 1e-13 >seq18 Length=865119 Score = 129 bits (142), Expect = 4e-25 Identities = 159/215 (74%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| ||| |||||| || ||||| || || || ||| |||| |||| || Sbjct 543455 ACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGGCCATCTTCG 543396 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 |||||||||||||||||||||| ||| || ||||| | || | ||||||||||| | Sbjct 543395 AGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTTGTCCTGG 543336 Query 34889 ATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGT 34944 || || ||||| || | ||||| || | ||| || || | ||| ||||| Sbjct 543335 ATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGT 543280 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979 || |||||||||||||| || ||||||||||||| Sbjct 543279 TTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGA 543245 >seq3 Length=2676204 Score = 105 bits (116), Expect = 4e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || ||||||| ||||| ||| ||||||||| || ||||| || || ||| |||| | Sbjct 1950019 CTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATATTATAATCGGAAAGGGTGCGACCG 1950078 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || |||||||||||||| ||||| |||| ||||| ||||| | || | || |||||| Sbjct 1950079 TCTTCCAGTTGCTTTCCAGCGAAAATCAAACGTTGTTGGTCGGGAGGAATGCCTTCCTTG 1950138 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || ||| | || | || | ||||| |||| ||| ||| Sbjct 1950139 TCTTGAATCTTAGACTTAACGTTGTCGATGGTGTCTGAAGATTCGACCTCAAGGGTGATG 1950198 Query 34943 GTCTTTCCCGTGAGGGTCTTTAC 34965 |||||||| || || ||||| || Sbjct 1950199 GTCTTTCCGGTAAGAGTCTTAAC 1950221 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||||| ||||| ||||| || || ||||| ||| | | | || Sbjct 1949566 AGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAAAGGGTTCTGCCGTCC 1949625 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||||||| || ||||||| |||||| || || | || | ||||||||||| Sbjct 1949626 TCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCCTCCTTGTCC 1949685 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || ||| ||| || || |||| || || | || || || | || || Sbjct 1949686 TGAATCTTTGATTTTAC--AT--TATCAATGGTATCTGACGATTCCACCTCTAATGTAAT 1949741 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || | ||||| |||||||| ||||| Sbjct 1949742 GGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1949777 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/196 (69%), Gaps = 10/196 (5%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| |||||||| || ||||| || | || |||| || |||||||| || || ||| Sbjct 1949815 TCCTTTTGAATGTTGTAATCCGAAAGTGTACGACCATCCTCAAGTTGCTTACCAGCAAAG 1949874 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACG--- 34903 || || ||||| || || | || | |||||||| || | || ||| || || Sbjct 1949875 ATAAGACGTTGTTGATCGGGTGGGATACCCTCCTTATCTTGGATCTTTGACTTCACATTG 1949934 Query 34904 --GATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 |||| |||| | ||| | || || | || || |||||||| || ||||||| Sbjct 1949935 TCGATGGTATCCGATGATT-----CAACCTCCAAAGTGATTGTCTTTCCGGTAAGGGTCT 1949989 Query 34962 TTACAAAGATCTGCAT 34977 | || ||||||||||| Sbjct 1949990 TGACGAAGATCTGCAT 1950005 >seq17 Length=875485 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/186 (72%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| || ||||| || || || || | || | || |||| ||||||||| ||||||| Sbjct 658245 CCTTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAGA 658186 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||||| || || | || | ||||||||||| | || || ||||| || Sbjct 658185 TCAAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT- 658129 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || || |||||| |||| ||| |||||||| ||||| |||||||| Sbjct 658128 -TGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTG 658070 Query 34964 ACAAAG 34969 || ||| Sbjct 658069 ACGAAG 658064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691109043694