Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 134 1e-25 seq3 113 3e-19 seq44 102 6e-16 seq13 91.5 1e-12 >seq1 Length=3942387 Score = 134 bits (148), Expect = 1e-25 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 || || ||||||||| || | |||||||||||||||||||||||||| | ||||| ||| Sbjct 1100601 GGCAAGGAAGGTCGTCTTCGTGGAAATTTGATGGGAAAGCGTGTCGACTTCTCTGCCCGT 1100542 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || || |||||| |||||| ||| || |||| |||| |||||||| |||| | |||| Sbjct 1100541 ACTGTCATTACTGGTGATCCCAATCTTTCTCTAGATGAGGTTGGTGTCCCTCGAAGTATT 1100482 Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGATTATTTGACTCAA 432467 || | || || || | | || | ||| ||| || ||||| ||| | ||| ||| Sbjct 1100481 GCCAGAATCCTCACATATCCGGAGACTGTTACACCACTGAATATCGATAAATTGCATCAG 1100422 Query 432468 TTAGTGAAAAATGGT--AAAAGAGTATATCCAGGTGCCAATTTTGTAATC 432515 | || ||||||||| | | ||| |||| ||||| || | ||| ||| Sbjct 1100421 CTTGTCAAAAATGGTCCAGATGAG--CATCCTGGTGCTAAATATGTCATC 1100374 Score = 95.1 bits (104), Expect = 9e-14 Identities = 206/306 (67%), Gaps = 8/306 (3%) Strand=Plus/Plus Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 |||| ||||||| ||||||||| | || | || | ||||| | || ||| | | Sbjct 139261 TATCGAAATCTTGACCTCCCAAATGGGTGTCACCGGCAGTAGCCTTAACAGTGAAGACAC 139320 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 || ||| | | ||||| |||||| ||||||||||| | ||| | || || | Sbjct 139321 CACCTTGGATGTTAAGAAGAGAAACATCGAAAGTTCCACCACCAAGATCGTAGATGAGAA 139380 Query 282312 CATTCATTTCTTTGTCTTGGTTTTT-----ATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 | || ||||||| ||| ||| | ||||||| || |||| |||||||| || Sbjct 139381 CGTTACGCTCTTTGT--TGGACTTTCCAGCACCAAGACCGTAAGCAATGGCAGCAGCGGT 139438 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 || || || || || | | || ||||||||||| || || ||||| || || || Sbjct 139439 AGGCTCGTTGATGATACGGAGGACGTTAAGACCAGCGATGGCACCAGCATCCTTGGTAGC 139498 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA-CTTCTT 282485 ||| | ||| ||||| || || || || ||||| || ||||| | ||| | |||||| Sbjct 139499 TTGACGTTGGTTGTCGTTGAAGTAAGCTGGGACAGTGATGACGGCCTTTGTGACCTTCTT 139558 Query 282486 TTCCAA 282491 |||| Sbjct 139559 GCCCAA 139564 >seq3 Length=2676204 Score = 113 bits (124), Expect = 3e-19 Identities = 247/368 (67%), Gaps = 3/368 (1%) Strand=Plus/Minus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || || || ||||| | ||| || ||||| |||||||| || || |||| | |||||| Sbjct 1870006 ATTCCGTTAGCATCAAGATCGAAGGTGACCTCAATTTGTGGAACACCTCGTGGTGCAGGT 1869947 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | || | |||| | || || || || ||| || || ||| Sbjct 1869946 GGGATACCAGTGAGCTCGAACTTGCCCAAAAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 1869887 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||||| | |||||| || ||| ||| || || || | || | || || | Sbjct 1869886 CCCTCGAAGACTTGGATGAGGACACCAGGTTGGTTGTCAGAGAAGGTGGAGAAGACCTCG 1869827 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 || || || || || || |||||||| ||| | |||||||| |||||||| Sbjct 1869826 GACTTCTTGGTTGGGATGGTGGTGTTTCTTGGAATGAGCTTGGTCATCTGTCCACCAGCA 1869767 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738 || || | ||| ||||| | || | |||||| | |||| || | || | | || Sbjct 1869766 GTCTCGATACCGAGAGACAATGGGGCGACATCGAGAAGGAGGATCTCGTTGGTGGACTTG 1869707 Query 281739 CATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 | | || | |||| ||||| || ||||||| |||||||| ||||||||||| ||| Sbjct 1869706 GAGGAAGTGTCACCAGAGAGAATGGCAGCTTGAACGGCAGCACCGTATGCAACAGCCTCA 1869647 Query 281798 TCAGGATT 281805 ||||| || Sbjct 1869646 TCAGGGTT 1869639 >seq44 Length=110725 Score = 102 bits (112), Expect = 6e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || || | |||||| || | ||| ||||||||||| || || | || ||| | ||| || Sbjct 53627 TTTTCCAAACCATAAGCGAGAGCGGCAGCAGTTGGCTCGTTGACAACTCTGAGAACGTTC 53686 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | ||| |||||| || ||||| ||||| ||||| | ||| |||||||| || ||||| Sbjct 53687 AAACCGGCAATTTGACCAGCATCCTTAGTAGCTTGACGTTGGGAATCGTTGAAGTATGCG 53746 Query 282455 GGAACAGTAATAACGGCAT 282473 ||||| |||| ||||||| Sbjct 53747 GGAACGGTAACGACGGCAT 53765 >seq13 Length=1254118 Score = 91.5 bits (100), Expect = 1e-12 Identities = 192/284 (68%), Gaps = 13/284 (5%) Strand=Plus/Minus Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 ||| |||||||| |||||||| | ||| | || | |||| || | || | || Sbjct 582701 ATCGAAATCTTCTCCTCCCAAGTGAGTGTCACCGGCAGTAGAAAGAACCTCAAAGACACC 582642 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAA---AATAAG 282309 | |||| || | ||||| |||||| |||||| ||||| | |||| | ||||| Sbjct 582641 ACGATCAATGGAGAGAAGAGAAACATCGAAGGTTCCTCCACCGAGATCATAGACAATAAT 582582 Query 282310 T--ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 | || |||| | | |||||| || | ||| || |||| ||| || || || Sbjct 582581 TTGACGTTCACCT-TCAGTCTTG-------TCCAAACCGTAGGCAATAGCTGCGGCGGTA 582530 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 ||||| || | || | | ||| || | ||| ||||| | || ||||| || |||||| Sbjct 582529 GGTTCGTTGACGATACGGAGAACGTTCAAACCGGCAATGATACCGGCATCCTTGGTGGCT 582470 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 |||||||| ||||| || || || |||||||||| ||| || Sbjct 582469 TGTCTTTGGTTGTCGTTGAAGTAGGCTGGAACAGTAACAACTGC 582426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740609485200276