Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3 143 5e-29 >seq3 Length=2676204 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || || || | ||| ||||| || || || || ||||| | Sbjct 1949777 TACCACCACGGAGACGAAGGACCAAATGTAAAGTCGATTCCTTTTGAATGTTGTAATCCG 1949836 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| || || ||||| || ||||||||||| || | ||||||||| || | Sbjct 1949837 AAAGTGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGTG 1949896 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||||||||| ||||||| || ||||| || || ||||| | ||| | Sbjct 1949897 GGATACCCTCCTTATCTTGGATCTTTGACTTCACATTGTCGATGGTATCCGATGATTCAA 1949956 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| || ||||| || || | ||||| || || |||||||| Sbjct 1949957 CCTCCAAAGTGATTGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCAT 1950005 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || ||||| || ||||| || ||||| ||||||||||| || || | | ||||||| Sbjct 1950022 AGGACCAAGTGAAGGGTAGACTCCTTCTGGATATTATAATCGGAAAGGGTGCGACCGTCT 1950081 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || ||||| |||||||| || || | | |||||| || ||||| || |||||||| ||| Sbjct 1950082 TCCAGTTGCTTTCCAGCGAAAATCAAACGTTGTTGGTCGGGAGGAATGCCTTCCTTGTCT 1950141 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 |||||||| | || || || || || || || || ||| || || | || || ||| Sbjct 1950142 TGAATCTTAGACTTAACGTTGTCGATGGTGTCTGAAGATTCGACCTCAAGGGTGATGGTC 1950201 Query 82779 TTGCCTGTCAACGTCTTTACAAATAT 82804 || || || | ||||| || | ||| Sbjct 1950202 TTTCCGGTAAGAGTCTTAACGACTAT 1950227 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || ||||| |||||||| |||||||| || || || ||| | | | ||| ||| Sbjct 1950305 AGGACCAAGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCACTCAAGGTGCGACCATCT 1950364 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || ||||||||||| || || || | | ||||| || ||||| ||||| ||||| || Sbjct 1950365 TCAAGTTGTTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGAGGAATTCCCTCCTTGTCC 1950424 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || ||||| | || ||||| || || || || | | || || || | || || ||| Sbjct 1950425 TGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCAACCTCGAGGGTAATAGTC 1950484 Query 82779 TTGCCTGTCA 82788 || || |||| Sbjct 1950485 TTACCGGTCA 1950494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981821841064414