Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq38 208 2e-48
seq35 105 2e-17
>seq38
Length=269250
Score = 208 bits (230), Expect = 2e-48
Identities = 520/780 (67%), Gaps = 11/780 (1%)
Strand=Plus/Plus
Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363
|| ||||| ||||||||||| || ||| | || | || ||| | ||||| | |
Sbjct 55305 TACTTTGGATTCAAAACTCTCGAGCGTTCATACCTTCTACGTCTTGATGGCAAAGTTGCA 55364
Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423
|||||||| ||||| ||| | | |||||||| |||||||||| || |||||||| ||
Sbjct 55365 GAACGTCCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGATGATATTGAA 55424
Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483
|| ||| ||| || | | | || ||| | | ||||| | || ||
Sbjct 55425 AGTGCTATCGAAACATACAACTTGATGTCAAACAAGTACTTCACACATGCCTCGCCAACA 55484
Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAAC 110543
|| || || || ||| || |||| | | || ||||| ||| | | || ||
Sbjct 55485 CTCTTCTCTGCGGGTACTCCACAAGCACAACTTTCATCATGCTTCCTTATCGACATGAAG 55544
Query 110544 GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TGCTCTTATTTCTAAAAA 110602
|| || |||||| |||||||| ||| || || |||| |||| | || || || ||
Sbjct 55545 GAGGACAGTATTGATGGTATTTACGATACT-TTGAAGATTTGTGCTATGATCTCAAAGAA 55603
Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662
| || || |||||| | || |||| || || | | || ||| | || ||
Sbjct 55604 TGCCGGTGGTATTGGTCTCAACATTCACCGAATCCGTGCTACTGGCGCATACATTGCCGG 55663
Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722
| || || || | || | ||||| ||| | |||| |||||| ||||||| |
Sbjct 55664 TACCAACGGAAACTCTAACGGTATCGTTCCTATGCTCCGAGTTTTCAACAACACTGCCAG 55723
Query 110723 ATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779
|||||| |||||||||| |||| | ||| | |||||| | || || || || ||
Sbjct 55724 ATATGTTGATCAAGGTGGTAATAAGCGTCCTGGTGCCTTTGCTGTTTACCTTGAGCCATG 55783
Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAG 110839
|||| | ||| | ||||| ||| | || || || |||||||| || |||||| |
Sbjct 55784 GCATGCGGATGTTTTTGAGTTCCTTGATCTACGCAAAAATCATGGCAAAGAAGAAGTTCG 55843
Query 110840 AGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGA 110899
||||| ||| | || || || |||||||| | ||| |||||||||| |||||| || |
Sbjct 55844 TGCACGCGATCTCTTCTACGCCTTGTGGATTCCTGATCTATTCATGAAGCGTGTTGAAAA 55903
Query 110900 AAATGGCATGTGGTCTCTTATGTGTCCTCATCG-TTCTCCTGGTCTATCTGATGTATATG 110958
||||| ||| |||| ||||| || || || | ||| ||| || | ||||| ||||
Sbjct 55904 GAATGGGGATTGGACTCTCATGTG-CCCCAACGAATGTCCAGGTTTAGCAGATGTTTATG 55962
Query 110959 GAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAA-ACAA 111017
| | ||||| || | || ||||| || ||||| | ||||||| |||||| || |
Sbjct 55963 GCGAGGAGTTCGAGGCTCTCTACGAGGGTTACGAAAAGGCAGGCAAGGGTCGCAAGACTA 56022
Query 111018 ATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCC 111076
|| | |||||| ||||||||| | || ||||| | ||| || || |||| |||
Sbjct 56023 --TCAAGGCTCAAAAACTTTGGTACTCCATTCTTGAGGCTCAAACCGAGACCGGAAATCC 56080
>seq35
Length=307329
Score = 105 bits (116), Expect = 2e-17
Identities = 144/201 (72%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846
||||| || || ||||| || || |||||| | ||||||||||||||| | | | |
Sbjct 74047 TTCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAAATGGATTCAAGATAAGAACTCCA 74106
Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906
||| || | | ||||| || || ||| |||||||| || ||||| || || | |
Sbjct 74107 CCTTTGCTCAACGTCTTGTCGCATTCGCTGCCGTTGAAGGCATCTTCTTCTCCGGATCCT 74166
Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966
|| ||||||| ||||| ||||||||||| | ||| | |||||| | || |||||
Sbjct 74167 TCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTTATGGCCGGACTCACCTTCTCCAACG 74226
Query 131967 AATTCATCTCGAGAGATGAAG 131987
|| ||||||| | || ||||
Sbjct 74227 AACTCATCTCCCGTGACGAAG 74247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186806322227386
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |