Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq38 208 2e-48 seq35 105 2e-17 >seq38 Length=269250 Score = 208 bits (230), Expect = 2e-48 Identities = 520/780 (67%), Gaps = 11/780 (1%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 || ||||| ||||||||||| || ||| | || | || ||| | ||||| | | Sbjct 55305 TACTTTGGATTCAAAACTCTCGAGCGTTCATACCTTCTACGTCTTGATGGCAAAGTTGCA 55364 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 |||||||| ||||| ||| | | |||||||| |||||||||| || |||||||| || Sbjct 55365 GAACGTCCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGATGATATTGAA 55424 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 || ||| ||| || | | | || ||| | | ||||| | || || Sbjct 55425 AGTGCTATCGAAACATACAACTTGATGTCAAACAAGTACTTCACACATGCCTCGCCAACA 55484 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAAC 110543 || || || || ||| || |||| | | || ||||| ||| | | || || Sbjct 55485 CTCTTCTCTGCGGGTACTCCACAAGCACAACTTTCATCATGCTTCCTTATCGACATGAAG 55544 Query 110544 GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TGCTCTTATTTCTAAAAA 110602 || || |||||| |||||||| ||| || || |||| |||| | || || || || Sbjct 55545 GAGGACAGTATTGATGGTATTTACGATACT-TTGAAGATTTGTGCTATGATCTCAAAGAA 55603 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 | || || |||||| | || |||| || || | | || ||| | || || Sbjct 55604 TGCCGGTGGTATTGGTCTCAACATTCACCGAATCCGTGCTACTGGCGCATACATTGCCGG 55663 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | || || || | || | ||||| ||| | |||| |||||| ||||||| | Sbjct 55664 TACCAACGGAAACTCTAACGGTATCGTTCCTATGCTCCGAGTTTTCAACAACACTGCCAG 55723 Query 110723 ATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779 |||||| |||||||||| |||| | ||| | |||||| | || || || || || Sbjct 55724 ATATGTTGATCAAGGTGGTAATAAGCGTCCTGGTGCCTTTGCTGTTTACCTTGAGCCATG 55783 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAG 110839 |||| | ||| | ||||| ||| | || || || |||||||| || |||||| | Sbjct 55784 GCATGCGGATGTTTTTGAGTTCCTTGATCTACGCAAAAATCATGGCAAAGAAGAAGTTCG 55843 Query 110840 AGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGA 110899 ||||| ||| | || || || |||||||| | ||| |||||||||| |||||| || | Sbjct 55844 TGCACGCGATCTCTTCTACGCCTTGTGGATTCCTGATCTATTCATGAAGCGTGTTGAAAA 55903 Query 110900 AAATGGCATGTGGTCTCTTATGTGTCCTCATCG-TTCTCCTGGTCTATCTGATGTATATG 110958 ||||| ||| |||| ||||| || || || | ||| ||| || | ||||| |||| Sbjct 55904 GAATGGGGATTGGACTCTCATGTG-CCCCAACGAATGTCCAGGTTTAGCAGATGTTTATG 55962 Query 110959 GAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAA-ACAA 111017 | | ||||| || | || ||||| || ||||| | ||||||| |||||| || | Sbjct 55963 GCGAGGAGTTCGAGGCTCTCTACGAGGGTTACGAAAAGGCAGGCAAGGGTCGCAAGACTA 56022 Query 111018 ATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCC 111076 || | |||||| ||||||||| | || ||||| | ||| || || |||| ||| Sbjct 56023 --TCAAGGCTCAAAAACTTTGGTACTCCATTCTTGAGGCTCAAACCGAGACCGGAAATCC 56080 >seq35 Length=307329 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846 ||||| || || ||||| || || |||||| | ||||||||||||||| | | | | Sbjct 74047 TTCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAAATGGATTCAAGATAAGAACTCCA 74106 Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906 ||| || | | ||||| || || ||| |||||||| || ||||| || || | | Sbjct 74107 CCTTTGCTCAACGTCTTGTCGCATTCGCTGCCGTTGAAGGCATCTTCTTCTCCGGATCCT 74166 Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966 || ||||||| ||||| ||||||||||| | ||| | |||||| | || ||||| Sbjct 74167 TCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTTATGGCCGGACTCACCTTCTCCAACG 74226 Query 131967 AATTCATCTCGAGAGATGAAG 131987 || ||||||| | || |||| Sbjct 74227 AACTCATCTCCCGTGACGAAG 74247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186806322227386