Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq18 120 2e-22
seq3 87.8 1e-12
seq17 86.0 4e-12
>seq18
Length=865119
Score = 120 bits (132), Expect = 2e-22
Identities = 166/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| | | |||||||||||| || |||||| ||| ||||| |||||||||||||
Sbjct 543475 CACCACCACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGG 543416
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| || ||||| | || || | ||| |||||||| || ||||| ||||| || || | |
Sbjct 543415 AAAGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTG 543356
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | || || ||||| || || | | |||| ||| | ||||||| || ||
Sbjct 543355 GAATTCCCTCCTTGTCCTGGATCTT-GGACTTGACATTGTCGATGGTGTCGGAAGACTCA 543297
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | ||||| ||||| || || | || || || |||||||||||
Sbjct 543296 ACCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 543247
>seq3
Length=2676204
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | |||||||||| ||| || ||||| ||||||||||| ||
Sbjct 1949778 ACCACCACGGAGACGAAGGACCAAATGTAAAGTCGATTCCTTTTGAATGTTGTAATCCGA 1949837
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||||| || | || || | ||| || || ||||| || | ||| || ||||| | ||
Sbjct 1949838 AAGTGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGTGG 1949897
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||| || || || || || || | |||| ||| | ||| || |||||| |
Sbjct 1949898 GATACCCTCCTTATCTTGGATCTT-TGACTTCACATTGTCGATGGTATCCGATGATTCAA 1949956
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||| || || || || | || || || ||||||||||||
Sbjct 1949957 CCTCCAAAGTGATTGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCATA 1950006
>seq17
Length=875485
Score = 86.0 bits (94), Expect = 4e-12
Identities = 129/181 (71%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621
||||| ||||||||||| ||||| || ||| |||| |||||||| ||||| || || |||
Sbjct 658243 TTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAGATC 658184
Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681
||||| || ||||| | || | || || ||||| || || | | |||| |||
Sbjct 658183 AAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTT-GGACTTGACATTGTC 658125
Query 33682 -ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740
| ||||||| || || || |||| ||||| || || || || | || || || ||
Sbjct 658124 GATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 658065
Query 33741 G 33741
|
Sbjct 658064 G 658064
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328702293409920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |