Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq18 102 2e-16
seq3 102 2e-16
>seq18
Length=865119
Score = 102 bits (112), Expect = 2e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || ||||| || ||||| ||||| | || || || ||| |||
Sbjct 543250 CAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCCGAC 543309
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||| || || || || |||||| || ||| ||
Sbjct 543310 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCCGACCAACAG 543369
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| | ||||||||||||||||| | |||||||| | || | ||||||||||| ||
Sbjct 543370 CGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTTTCCGATTACAACATC 543429
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTT 206381
|| || ||||| ||||||||| | || ||
Sbjct 543430 CAAAAGGAGTCCACTCTTCACTTGGTGTT 543458
>seq3
Length=2676204
Score = 102 bits (112), Expect = 2e-16
Identities = 146/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || ||||| || ||||| | || || ||| ||| ||||| ||||
Sbjct 1950218 AAGACTCTTACCGGAAAGACCATCACCCTTGAGGTCGAATCTTCAGACACCATCGACAAC 1950159
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||||||||| || ||||| ||| || ||| ||| | | || |||
Sbjct 1950158 GTTAAGTCTAAGATTCAAGACAAGGAAGGCATTCCTCCCGACCAACAACGTTTGATTTTC 1950099
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| |||||||| ||||||| || | || | ||||||| || ||||||| ||||||
Sbjct 1950098 GCTGGAAAGCAACTGGAAGACGGTCGCACCCTTTCCGATTATAATATCCAGAAGGAGTCT 1950039
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
|| |||||| | || | ||||||||
Sbjct 1950038 ACCCTTCACTTGGTCCTCAGACTTCG 1950013
Score = 84.2 bits (92), Expect = 5e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
|||||||| | || | ||| ||||||||||||||||||| || |||||| ||| ||
Sbjct 1950296 CGAAGTCTGAGGACCAAGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCACTCAAGGTG 1950355
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
| |||||||| || || ||||||||||| || | || |||||
Sbjct 1950356 CGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAAACGCTGTTG 1950399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181814349474346
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |