Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq38 318 8e-82 seq35 107 3e-18 >seq38 Length=269250 Score = 318 bits (352), Expect = 8e-82 Identities = 1330/2071 (64%), Gaps = 61/2071 (3%) Strand=Plus/Minus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || || ||||| |||| || || | | ||||||| ||||||||| ||||| |||| | Sbjct 57127 GTGAATTGAATAGGTGCTGAGGCAGCCATAGTACGTAAATAGTACATTCCGGTCTTCAAA 57068 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || | |||| || |||||||| ||| | ||| | ||||| || Sbjct 57067 CCCAATTTCCAACCAGCAAAATGCATGGATGTAATCTTGCCCATTGTAGGATCCTTCATG 57008 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 ||||| ||||| |||||| |||||| ||||| || || | ||| || ||||||| | | Sbjct 57007 TGAATGTTCATTGATTGAGATTGATCAATGAATGCACCACGATCAGCAGCCATTTGAACA 56948 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 || | ||| | |||||||||| |||||| ||| ||||| ||| |||||| Sbjct 56947 ATTGTTCGTTGGGAGATTTCCCAAACAGTCTTGTAAAGAGCCTTGATGTCAGCTGGAATA 56888 Query 68614 CTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670 | | |||||||||||||||||||||| | || || ||||| || | ||| | Sbjct 56887 TTGGGGATATTTTGAATGGATCCACCATCAGCAATGATACGGTTCTTCATATTGTCAGAC 56828 Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGC---GGATTAACTATTTGAAATTCC 68727 || | | || | || || |||| || |||||||| | ||| ||||| Sbjct 56827 CAGAGACCCATATC-GACAAGGTCCTT--GAGAAGCCATGGATTAACGACTTGGAATTCT 56771 Query 68728 CCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTT 68787 || | | || | ||||| ||| || || || || ||||| | | |||| || Sbjct 56770 CCGGCAAGAACACGACGAGAGTAGATGTTTGAAGTGTAAGGTTCGAAACATTCGTTGAAG 56711 Query 68788 CCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGA 68847 || |||||||| | || ||||| ||||||||||| || | | | || | | Sbjct 56710 CCAAGAATTTGGGATGTGCTAGCAGTAGGCATAGGTGCAACTAGGAGAGAGTTGCGGATT 56651 Query 68848 CCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACA 68907 || ||| |||| | || | | | ||||||||| | ||||| ||| ||| Sbjct 56650 CCGTGTTGCTTGATGGATTGCTTCAAAGAGTCCCAATCCCACAAATCAGTAGGTGTAACC 56591 Query 68908 TTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAA 68967 ||| | ||||||||| || || ||| | || || | ||| ||||| || Sbjct 56590 CCCCACATATCGTATTGAAGTTCACCCTTAGAGACTGGGGAGCCTTGATAGGTTTCGTAT 56531 Query 68968 GGTCC---TTCCTGTTC-AGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGT 69023 || || ||||| | | | || | | || | | || ||| ||| || || || Sbjct 56530 GGGCCAAGTTCCTTTGCGATCTCGA-CGGAAGAGGTC---AAGGCAGCGTGGTAGATGGT 56475 Query 69024 TTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAG 69083 |||||||| | | ||||| | || |||||| || || |||||| | | || || Sbjct 56474 CTCGAAAATTTGTATGTTGAGGTGTTTGGCTTCTGGAGAGTCAAATGGAAGACG-AAGAG 56416 Query 69084 --AATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTT 69141 || ||| ||||| || | || ||||| |||| | ||||||||| ||| | ||| Sbjct 56415 CCAAGAAA-GCATCAGCAAGACCTTGAACACCAACAGCGATAGGTCGATGACGGAAATT- 56358 Query 69142 GAACTTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCG 69200 | |||| | | |||| | ||||| || || || || ||||| ||||| | |||| Sbjct 56357 GCTTTTTCGGGCCTCTGCGACTGGATAGTAGTTGATGTCAATAATCTTATTCAAGTTTCT 56298 Query 69201 GACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA-------TCGTCCATCTA 69253 || || |||| || || || | || || | |||||| | || | ||| | Sbjct 56297 AACAACAACTTGGACAACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCATTCATGTT 56238 Query 69254 TAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTG 69313 | ||| | | | || | || || | ||||| || ||||||| | || Sbjct 56237 GACGAAAGTTGGTAAA-GCGATGGAAGCCAAGTTACAGCAAGCAACCTCATCTGG---TG 56182 Query 69314 CA---TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCT 69370 || || | | || ||||| || | ||| | ||||| ||||| || | | Sbjct 56181 CAGAGTACTCAACGATTTCTGTGCACAAATTGGAGCTGCGAATAGTACCCAGGTTCTTTT 56122 Query 69371 GATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCT 69430 | || ||||| ||||| || || ||||||||||| || || ||| | || || || | | Sbjct 56121 GGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAAGGGATTTCCGGTCTCGGTTT 56062 Query 69431 GAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCT 69490 ||| || | ||| || | ||||| ||| || || |||||| || ||| Sbjct 56061 GAGCCTCAAGAATGGAGTACCAAAGTTTTTGAGCCTTGATA---GTCTTGCGACCCTTGC 56005 Query 69491 CT---TTTTCATATTGT--GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAA 69545 || ||||| || ||| | |||| ||||| || || || ||||||| | || Sbjct 56004 CTGCCTTTTCGTAACCCTCGTAGAGAGCC--TCGAACTCCTCGCCATAAACATCTGCTAA 55947 Query 69546 TCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTT---AACTCGTTT 69602 || |||||||| || || ||||| | | ||| ||| ||| ||| ||| || || Sbjct 55946 ACCTGGACATTCGTTGGGGCACATGAGAGTCCA---ATCCCCATTCTTTTCAACACGCTT 55890 Query 69603 CATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATT 69662 ||| |||||||| |||||||| | || |||||||| | | | | |||||| || Sbjct 55889 CATGAATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCTTT 55830 Query 69663 TCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATA 69722 || |||||| ||||| || ||||| | || ||| | ||||||||| || || || Sbjct 55829 GCCATGATTTTTGCGTAGATCAAGGAACTCAAAAACATCCGCATGCCATGGCTCAAGGTA 55770 Query 69723 TATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATT 69782 | || | | | || || || ||||| || || ||||| | |||||||||||||| || Sbjct 55769 AACAGCAAAGGCACCAGGACGCTTATTACCACCTTGATCAACATATCTGGCAGTGTTGTT 55710 Query 69783 ATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACT 69842 | |||| ||||| |||| ||||| ||||| || || || || || | ||| || Sbjct 55709 GAAAACTCGGAGCATAGGAACGATACCGTTAGAGTTTCCGTTGGTACCGGCAATGTATGC 55650 Query 69843 TCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAG 69902 || | || || || ||| ||||| || || || || | || ||||| | Sbjct 55649 GCCAGTAGCACGGATTCGGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCAT 55590 Query 69903 AGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAG 69962 ||||||| ||||| || || || ||||| || || || || || |||||| | ||| Sbjct 55589 AGCACAAATCTTCAAAGTATCGTAAATACCATCAATACTGTCCTCCTTCATGTCGATAAG 55530 Query 69963 AAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTG 70022 || || || | ||| ||| ||| |||||| || | ||| || || || || Sbjct 55529 GAAGCATGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGCGAGGCATG 55470 Query 70023 AGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACT 70081 ||||| | || | || | || ||||||||||| ||||| ||| ||||| ||| Sbjct 55469 TGTGAAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCAATATCATCACC 55410 Query 70082 GATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTAT 70141 | ||||| || | || |||||||| | ||| || || || |||||| | ||| || Sbjct 55409 G-TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTTTGCCAT 55351 Query 70142 TTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA--TGAAAA 70199 | | |||||||| || |||||||| || ||||| || | || ||||| Sbjct 55350 CAAGACGTAGAAGGTATGAACGCTCGAGAGTTTTGAATCCAAAGTATTGATAGTTGAAA- 55292 Query 70200 GTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCAT 70259 |||| ||||| | ||| ||||||| |||| |||| || | | |||| | || | Sbjct 55291 -TCTCGGTCGTAGACAATGGCAGAATTGAGTTCCTCCTCATGTCTCATAAC-ACATTCGA 55234 Query 70260 AACAGTAGGTG-AGATAATCGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGAATA 70318 || | || || || |||||| | | |||||| | || || ||| | | ||| Sbjct 55233 AAGTTTCCTTGCTAATCATAGGAGATGCTGTGCCATTTCTGGGGTTTGTATACTGGTATA 55174 Query 70319 AATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTA 70378 |||| || || | || |||| || |||| ||||| | || || | || | Sbjct 55173 AATCGCGAATAACGTGCGAGAACTGTTTCTTGGTTTGTTTGTGGAGGTTGGAGACTGCAA 55114 Query 70379 TTCTGGCTGCTAGAATAGCATAGTCAGGATG 70409 | | || |||||||| ||||| || ||||| Sbjct 55113 TACGAGCAGCTAGAATGGCATAATCGGGATG 55083 >seq35 Length=307329 Score = 107 bits (118), Expect = 3e-18 Identities = 296/446 (66%), Gaps = 12/446 (3%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 |||||||| |||||||| | || ||||| || ||||| ||||| |||| || || || Sbjct 74560 TTTTGGTAATCACCAACTCTCTTTTCGAAGAAGTTAGTCTTGCCGGCCAAGGAAATGTTC 74501 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATA---tttttttttAAATCCTAATTCTGAA 39442 |||||||| ||||| || || | | || || ||| | ||| || || | Sbjct 74500 TCCATGAAGTCAAATGGGTTGGCAGACTTGTAGACTTTGTCGTTA---CCCAAAGCGATG 74444 Query 39443 ATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATG 39502 | | | ||| ||||| ||||| |||||| ||||| | | ||||| || | Sbjct 74443 AGGAGACGATCAGCAACGAATTCGATGTATTGCTTCATGAGGGTGGAGTTCATGCCCAAA 74384 Query 39503 AGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATT 39562 || | || |||||||| || | || |||| || || | |||||||| || || Sbjct 74383 AGAGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCAATTGCGACGGCCTCGGTGATA 74324 Query 39563 ATCGATGTT--ACTACCT-CATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAG 39619 | || | || || | | | | | || || ||| | ||| || | | ||| Sbjct 74323 A-CG-TCTTGGACGGCTTGCTTGGATGGGCGG-TGCTTGAGATGGGAGAAGAGGAGGCAT 74267 Query 39620 GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCA 39679 ||||| || || || || || || | || | |||||| || || |||||||| Sbjct 74266 GCGAAATCGGTGTGGAGACCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCG 74207 Query 39680 GGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATG 39739 | ||| ||||||||||| |||||||| || || | || || ||||| || ||||||||| Sbjct 74206 GCCATAAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGATCCGGAGAAGAAGATG 74147 Query 39740 CCTTCTACTGCTGCAAATGCAACAAG 39765 ||||| || || || ||||| ||||| Sbjct 74146 CCTTCAACGGCAGCGAATGCGACAAG 74121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686905142210640