Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq38 147 2e-30 seq3 86.0 5e-12 >seq38 Length=269250 Score = 147 bits (162), Expect = 2e-30 Identities = 474/724 (65%), Gaps = 25/724 (3%) Strand=Plus/Minus Query 131369 TACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTG 131428 |||| ||| ||||| | ||||||||| ||| || || |||| || | ||| ||| Sbjct 56176 TACTCAACGATTTCTGTGCACAAATTGGAGCTGCGAATAGTACCCAGGTTCTTTTGGTTG 56117 Query 131429 CTTTTAGCATTCACATGG-TCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGT 131487 || || || |||| |||||||| | |||| |||| | || || ||| ||||| Sbjct 56116 CTCTTCTTGTTG-CATGCATCCTTGTAAAGCATGAAGGGATTTCCGGTCTCGGTTTGAGC 56058 Query 131488 TTCAATAATGTATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTA------TTGGCC 131541 |||| |||| | | |||||| |||| |||||| | | ||| | Sbjct 56057 CTCAAGAATGGAGTACCAAAGTTTTTGAGCC-----TTGATAGTCTTGCGACCCTTGCCT 56003 Query 131542 GCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCA-AACGAACTGTCCAAAT 131600 || |||| ||||| ||||| | | || || | | |||| || | ||| | ||| Sbjct 56002 GCCTTTT-CGTAACCCTCGTAGAGAGCCTCGAACTCCTCGCCATAAACATCTG-CTAAAC 55945 Query 131601 TGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAA 131660 ||||||||| |||| ||||| || | ||| | || |||| |||||| |||||||| | Sbjct 55944 CTGGACATTCGTTGGGGCACATGAGAGTCCAATCCCCATTCTTTTCAACACGCTTCATGA 55885 Query 131661 ACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCA 131720 | | ||| || | ||| || ||||| || ||||| | || |||||| | || | Sbjct 55884 ATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCTTTGCC-A 55826 Query 131721 TAAtttttttCAAATTTAAA-AAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACT 131779 | |||||| | | || || || |||| ||||||||||| || || | || || Sbjct 55825 TGATTTTTGCGTAGATCAAGGAACTCAAAAACATCCGCATGCCATGGCTCAAGGTAAACA 55766 Query 131780 GCCATTGCGCCTTTGCGC---TTACCGCCTTGATTAACATGACGAACCATGTTGTTGTAT 131836 || | || || ||| ||||| ||||||| ||||| | | |||||||| | Sbjct 55765 GCAAAGGCACCAGGACGCTTATTACCACCTTGATCAACATATCTGGCAGTGTTGTTGAAA 55706 Query 131837 ACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCA 131896 || || | ||| || | | |||||| | |||||| ||||| | |||||| |||| Sbjct 55705 ACTCGGAGCATAGGAACGATACCGTTAGAGTTTCCGTTGGTACCGGCAATGTATGCGCCA 55646 Query 131897 TTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCG 131956 | || | |||| ||||| |||||| |||||||| ||| | | || ||||| | || Sbjct 55645 GTAGCACGGATTCGGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATAGCA 55586 Query 131957 CATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAG 132016 || | | | ||| | || ||||| || | |||||| | ||||||| | ||| Sbjct 55585 CAAATCTTCAAAGTATCGTAAATACCATCAATACTGTCCTCCTTCATGTCGATAAGGAAG 55526 Query 132017 CAAGAGGACAACTGT--TGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTG 132074 || || || | ||| | ||| | || || || || || | ||| || ||| |||| Sbjct 55525 CATGATGAAAGTTGTGCTTGTGGA--GTACCCGCAGAGAAGAGTGTTGGCGAGGCATGTG 55468 Query 132075 TAAA 132078 | || Sbjct 55467 TGAA 55464 >seq3 Length=2676204 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097 ||||||||||| || || || |||||||| ||||| || | | || | || | || || Sbjct 1949797 ACCAAATGTAAAGTCGATTCCTTTTGAATGTTGTAATC-CGAAAGTGTACGACCATCCTC 1949855 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 || || ||||| || | || ||||| |||||||| || || | |||||| ||||| Sbjct 1949856 AAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGTGGGATACCCTCCTTATCTTG 1949915 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| |||| | || | || || | | |||||| || | ||| || | || Sbjct 1949916 GATCTTTGACTTCACATTGTCGATGGTATCCGATGATTCAACCTCCAAAGTGATTGTCTT 1949975 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || || ||||| |||||| Sbjct 1949976 TCCGGTAAGGGTCTTGACGAAGATCTGCATA 1950006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424932193793712