Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq38 239 6e-58 seq35 104 3e-17 >seq38 Length=269250 Score = 239 bits (264), Expect = 6e-58 Identities = 1164/1813 (64%), Gaps = 59/1813 (3%) Strand=Plus/Minus Query 110368 ATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTT 110427 ||||||||| |||||||| | || |||||| | | |||||| || | | ||| Sbjct 57089 ATAGTACATTCCGGTCTTCAAACCCAATTTCCAACCAGCAAAATGCATGGATGTAATCTT 57030 Query 110428 GGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCC 110487 | ||| || ||| | |||| | |||||| |||| ||| |||||||| || Sbjct 57029 GCCCATTGTAGGATCCTTCATGTGAATGTTCATTGATTGAGATTGATCAATGAATGCACC 56970 Query 110488 CCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAA--TTTCCCAAACTGTGCGATAG 110545 || | || ||||| | || | | ||| | | |||||||||| || || Sbjct 56969 ACGATCAGCAGCCATTTGAACAA--TTGTTCGTTGGGAGATTTCCCAAACAGTCTTGTAA 56912 Query 110546 AGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACC 110605 ||| |||||| ||| |||| |||| | |||||| || ||||| || || ||| | Sbjct 56911 AGAGCCTTGATGTCAGCTGGAATATTGGGGATATTTTGAATGGATCCACCA----TCAGC 56856 Query 110606 A-TGAGA---TCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAG 110661 | ||| | | |||||||| | ||||||||||| || | ||||| |||| || Sbjct 56855 AATGATACGGTTCTTCATATTGTCAGACCAGAGACCCATATCGACAAGGTCCTTGA-GAA 56797 Query 110662 GTGCTTG-TTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTG 110720 | | | || || | || || || || || | | ||||||||||| | Sbjct 56796 GCCATGGATTAACGACTTGGAATTCTCCGGCAAGAACACGACGAGAGTAGATGTTTGAAG 56737 Query 110721 TGTATGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGGAGGCTGTTGGCATT 110779 |||| ||||| || ||||| || | |||||| |||| | ||| || || ||||| Sbjct 56736 TGTAAGGTTCGAAACATTCGTTGA-AGCCAAGAATTTGGGATGTGCTAGCAGTAGGCATA 56678 Query 110780 GGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCC 110839 ||||| | | ||| ||| || | || | | ||||||| || ||| | | ||| Sbjct 56677 GGTGCAACTAGGAGAGAGTTGCGGATTCCGTGTTGCTTGATGGATTGCTTCAAAGAGTCC 56618 Query 110840 CAGTCGTAGT--TGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAG--CACCCCTTG 110895 || || | | || | ||| | ||| ||||||| || | ||||| ||||| | | Sbjct 56617 CAATCCCACAAATCAG-TAGGTGTAACCC-CCCACATATCGTATTGAAGTTCACCCTTAG 56560 Query 110896 GGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGC 110954 ||| ||||| || | | ||||||| || | || | | | || | || || | Sbjct 56559 AGACTGGGGAG--CCTTGATAGGTTTCGTATGGGCCAAGTTCCTTTGCGATCTCGACGGA 56502 Query 110955 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 111014 || ||| | ||||| || ||||| || || || | || | | ||||||| Sbjct 56501 AGAGGTCAAGGCA-GCGTGGTAGATGGTCTCGAAAATTTGTATGTTGAGGTGTTTGGCTT 56443 Query 111015 CATCTGAATCAAATGCGTAGCGGCACAA--AATAAATACATCCGCGAGACCTTGAACACC 111072 | || ||||||| | || | | | || ||| |||| || |||||||||||||| Sbjct 56442 CTGGAGAGTCAAATG-GAAGACGAAGAGCCAAGAAAG-CATCAGCAAGACCTTGAACACC 56385 Query 111073 CAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT-CAACGGGATAAAAAT 111131 | | | ||||||| || || | ||| ||||| || ||| | || ||||| | | Sbjct 56384 AACAGCGATAGGTCGATGACGGAAATTGCTTTTTCGGGCC-TCTGCGACTGGATAGTAGT 56326 Query 111132 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT-TCATGAAGTTTT 111190 | ||||||| | || | ||| | ||||| ||| | | || ||||| ||| Sbjct 56325 TGATGTCAATAATCTTATTCAAGTTTCTAACAACAA-CTTGGACAACCTCGTGAAGCTTT 56267 Query 111191 TCATAATCAAAAGTGCGAGTCTC-TTCAT--TGACATACTTTGGAAGGGCGATTGATGCC 111247 | ||||| |||| | ||| ||||| |||| | |||| | ||||| || ||| Sbjct 56266 TGGAAATCATAAGTTCC---CTCATTCATGTTGACGAAAGTTGGTAAAGCGATGGAAGCC 56210 Query 111248 AAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTG 111307 || || || ||| |||||| | | |||||| | |||||||| || || ||| Sbjct 56209 AAGTTACAGCAAGCAACCTCATCTGGTGCAGAGTACTCAACGATTTCTGTGCACAAATTG 56150 Query 111308 GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAG 111367 || || ||| || |||| ||||||||||| |||||||||||||| ||||||||||| Sbjct 56149 GAGCTGCGAATAGTACCCAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAA 56090 Query 111368 AGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCG 111427 |||||| |||| | || ||||| || || | | ||||| | | ||||| | Sbjct 56089 AGCATGAAGGGATTTCCGGTCTCGGTTTGAGCCTCAAGAATGGAGTACCAAAGTTTTTGA 56030 Query 111428 GC--TGGTACAATGGCGTTGGCCCGTCCCT-CCGCCTCGTACTTTGTGTAGAGGGCTTCA 111484 || || || | || | ||| | ||| || ||||| |||||| || || Sbjct 56029 GCCTTGATAGTCTTGC---GACCCTTGCCTGCCTTTTCGTAACCCTCGTAGAGAGCCTCG 55973 Query 111485 AACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCAT 111544 |||||||| || | || | | |||||| | || || || | |||| ||| Sbjct 55972 AACTCCTCGCCATAAACATCTGCTAAACCTGGACATTCGTTGGGGCACATGAGAGTCCAA 55913 Query 111545 TGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGA 111604 | ||| | ||||| ||||||||||| || || |||||||||| || | |||||| Sbjct 55912 TCCCCATTCTTTTCAACACGCTTCATGAATAGATCAGGAATCCACAAGGCGTAGAAGAGA 55853 Query 111605 TCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGAT 111663 || | | || ||| | ||||| | || || || |||| ||||||||||| | | Sbjct 55852 TCGCGTGCA-CGAACTTCTTCTTTGCCATGATTTTTGCGTAGATCAAGGAACTCAAAAAC 55794 Query 111664 ATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGC 111717 |||||| |||||||||||||| || || || | | || ||||| ||| | Sbjct 55793 ATCCGCATGCCATGGCTCAAGGTAAACAGCAAAGGCACC---AGGACGCTTATTACCACC 55737 Query 111718 TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGA 111777 ||||| ||||| | || ||| ||| || || || ||||| |||| ||||| | || Sbjct 55736 TTGATCAACATATCTGGCAGTGTTGTTGAAAACTCGGAGCATAGGAACGATACCGTTAGA 55677 Query 111778 TTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCC 111837 | || || || || ||| | | | || | | || |||| | || Sbjct 55676 GTTTCCGTTGGTACCGGCAATGTATGCGCCAGTAGCACGGATTCGGTGAATGTTGAGACC 55617 Query 111838 AATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTT 111897 |||||| || || ||||||||| ||||| | | | ||| | || ||||| | Sbjct 55616 AATACCACCGGCATTCTTTGAGATCATAGCACAAATCTTCAAAGTATCGTAAATACCATC 55557 Query 111898 GATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACC 111957 || ||||||||| || ||||||||||||| || | || | | ||| ||||| Sbjct 55556 AATACTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGTTGTGCTTGTGGAGTACC 55497 Query 111958 AGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATG 112016 ||| |||||| ||||| | || || |||| ||| | | |||||| || ||||| Sbjct 55496 CGCAGAGAAGAGTGTTGGCGAGGCATGTGTGAA-GTACTTGTTTGACATCAAGTTGTATG 55438 Query 112017 TCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGT 112076 | || | || ||||| || || ||||| || || | || || ||||||| ||| | Sbjct 55437 TTTCGATAGCACTTTCAATATCATCACCGTGAATACCAACGGCAACACGCATGATCATTT 55378 Query 112077 ACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTT 112136 ||||| ||| | ||||||| || ||| |||| || ||| || |||| Sbjct 55377 GTTGTGGACGTTCTGCAACTTTGCCATCAAGACGTAGAAGGTATGAACGCTCGAGAGTTT 55318 Query 112137 TGAGACCAAAGTA 112149 ||| |||||||| Sbjct 55317 TGAATCCAAAGTA 55305 >seq35 Length=307329 Score = 104 bits (114), Expect = 3e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||||||||| || || ||||| || ||||| || |||||| || || | ||| ||||| Sbjct 74255 GTGGAGACCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCGGCCATAAGACC 74196 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | |||| | ||| || |||||||||||||| || || || Sbjct 74195 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGATCCGGAGAAGAAGATGCCTTCAACGGC 74136 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCATTTCATTG 122848 || || || | ||| |||| || |||| | ||| ||| | | || |||||| | | Sbjct 74135 AGCGAATGCGACAAGACGTTGAGCAAAGGTG-GAGTTCTTATCTTGAATCCATTTGACAG 74077 Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTAC 122879 |||| | |||||||||| || || || || Sbjct 74076 CCCAGTCGGCCTTCTTCTTGATGCAAGGAAC 74046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028655729600