Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3 167 7e-36 seq1 152 2e-31 seq17 102 2e-16 seq13 96.9 1e-14 >seq3 Length=2676204 Score = 167 bits (184), Expect = 7e-36 Identities = 178/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | ||| | ||| || || |||||||| || | Sbjct 1949771 TTTGCATACCACCACGGAGACGAAGGACCAAATGTAAAGTCGATTCCTTTTGAATGTTGT 1949830 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || | ||| || ||||| |||||||| || ||||||||||| |||||||| |||| Sbjct 1949831 AATCCGAAAGTGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGAT 1949890 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || ||||| || || || | || ||||| || || | ||| |||| Sbjct 1949891 CGGGTGGGATACCCTCCTTATCTTGGATCTTTGACTTCACATTGTCGATGGTATCCGATG 1949950 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||| || | || | |||||||||||| || || || || || |||||||| Sbjct 1949951 ATTCAACCTCCAAAGTGATTGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCAT 1950005 Score = 152 bits (168), Expect = 2e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | ||| || || | ||||| |||||||| || || ||||||||||| Sbjct 1950003 CATACCACCACGAAGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATATTATAATC 1950062 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || ||||| ||||| |||||||| || || | |||||| || || || Sbjct 1950063 GGAAAGGGTGCGACCGTCTTCCAGTTGCTTTCCAGCGAAAATCAAACGTTGTTGGTCGGG 1950122 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| || || ||||| |||| || || || || || | || || | ||| Sbjct 1950123 AGGAATGCCTTCCTTGTCTTGAATCTTAGACTTAACGTTGTCGATGGTGTCTGAAGATTC 1950182 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || ||||| || | ||||||||||| || || || || Sbjct 1950183 GACCTCAAGGGTGATGGTCTTTCCGGTAAGAGTCTTAAC 1950221 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 140547 TCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAG 140606 || ||||||||||| ||||| || | |||| || || || | ||| ||||| |||||| Sbjct 1949587 TCCTTTTGAATATTGTAATCCGAAAGGGTTCTGCCGTCCTCCAATTGCTTTCCTGCAAAG 1949646 Query 140607 ATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTA 140666 || | ||||| |||||||| ||||| || || || |||||||| || | |||||||||| Sbjct 1949647 ATCAATCGTTGTTGATCAGGTGGAATGCCCTCCTTGTCCTGAATCTTTGATTTTACATTA 1949706 Query 140667 TCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACA 140726 ||||| | ||| || | ||| || || | ||||| ||||| || || | || || ||| Sbjct 1949707 TCAATGGTATCTGACGATTCCACCTCTAATGTAATGGTCTTGCCAGTCAAAGTCTTGACA 1949766 Query 140727 AAAATCTGCAT 140737 || || ||||| Sbjct 1949767 AAGATTTGCAT 1949777 Score = 136 bits (150), Expect = 1e-26 Identities = 159/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | ||| || || | || |||||||||||||| || || || | Sbjct 1950282 TTTGCATACCACCACGAAGTCTGAGGACCAAGTGGAGAGTAGACTCTTTCTGGATGTTGT 1950341 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||| || || || |||||||||||||||||||| || || || | ||| || || | Sbjct 1950342 AGTCACTCAAGGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAAACGCTGTTGGT 1950401 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||||||||| || || ||||| || || | || ||||| || || | || | || Sbjct 1950402 CGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTC-GCTG 1950460 Query 140683 G-TTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | ||||| || || |||| ||||| ||||| Sbjct 1950461 GACTCAACCTCGAGGGTAATAGTCTTACCGGT 1950492 >seq1 Length=3942387 Score = 152 bits (168), Expect = 2e-31 Identities = 262/379 (69%), Gaps = 6/379 (2%) Strand=Plus/Plus Query 378121 TCAAATCCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGTC 378180 || || ||||| || ||||| ||| |||||||| | | | ||| | || || Sbjct 1098965 TCTAAACCATCTTCACCATAGACGAACTGAACAATATCACCGAGGGAGTTACGAACGGTA 1099024 Query 378181 ATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCA 378240 |||||| | |||| | ||| || | ||||| | ||| || || ||| |||||| Sbjct 1099025 CCGTCATATTTGGCCATGACATCCTCAAGGGCTTTGACAAGACGACGTTGAATGTAACCA 1099084 Query 378241 GTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAG 378300 |||| ||| ||||| ||||||||||| ||||| |||||||| ||||||| || || Sbjct 1099085 GTTTCTGCAGTCTTAACCGCAGTATCAATCAAACCTTCACGACCAGCCATTGCGTGAAAA 1099144 Query 378301 AATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCT 378360 || || || || || || || || | || | | || |||||| ||| ||||| | || Sbjct 1099145 AAGAACTCTGTTGGGGTGAGACCTCTAAGATACGAGTTCTCAACAAACCCTCTCGATTCT 1099204 Query 378361 GGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATT 378420 ||||||| ||| | || || |||| || | ||||||| || || || | || || Sbjct 1099205 GGCGAATAATCGTCCTTGGTGAAATGTGGAAGAGTACGATACTTGAAACCGAAAGGGATA 1099264 Query 378421 CGTTTTCCATCAACATTCTGTTGAC---CAAGTGCAGAAACCATTTGAGCAATATTTAAA 378477 ||||| || ||||| ||||||| |||| ||||| ||| |||| |||||| | | Sbjct 1099265 CGTTTACCTTCAACGGATTGTTGACCCACAAGGGCAGA---CATCTGAGAAATATTGATA 1099321 Query 378478 TCACTACCTTTAGACCCAG 378496 | ||||||||| |||| Sbjct 1099322 GTAGAACCTTTAGAACCAG 1099340 Score = 118 bits (130), Expect = 3e-21 Identities = 509/786 (65%), Gaps = 29/786 (4%) Strand=Plus/Minus Query 349565 ATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTA 349624 ||||||||||||||||||| | || || | | || || | || || || ||||| Sbjct 139588 ATGAAGGAAATTGCTGAAGTCAAGTTGGGCAAGAAGGTCACAAAGGCCGTCATCACTGTC 139529 Query 349625 CCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGG 349684 ||||| || || || || ||| ||| || || || |||||||| ||| || || Sbjct 139528 CCAGCTTACTTCAACGACAACCAACGTCAAGCTACCAAGGATGCTGGTGCCATCGCTGGT 139469 Query 349685 TTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGAT 349744 | || || || | || || || || || || ||||| || ||||| || || |||| | Sbjct 139468 CTTAACGTCCTCCGTATCATCAACGAGCCTACCGCTGCTGCCATTGCTTACGGTCTTGGT 139409 Query 349745 AAAATGAGTGACCAAGaaaaa----aaTATTCTTATTTTTGATTTAGGTGGTGGTACTTT 349800 || | |||| ||| | || |||| || | ||| | |||||||| ||||| Sbjct 139408 -GCTGGAAAGTCCAACAAAGAGCGTAACGTTCTCATCTACGATCTTGGTGGTGGAACTTT 139350 Query 349801 TGATGTATCACTAC-TAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859 ||||| || || | ||||| | ||| || | || ||||| || ||||| |||| Sbjct 139349 CGATGTTTCTCTTCTTAACA-TCCAAGGTGGTGTCTTCACTGTTAAGGCTACTGCCGGTG 139291 Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATA--ATCGT-CTCGTTTCGCATTTTGTTAAAG 349916 | || ||| | || || ||||||| |||| | | | |||| ||| || || | Sbjct 139290 ACACCCATTTGGGAGGTCAAGATTTCGATACCAACTTGCTCG---AGCACTTCAAGAAGG 139234 Query 349917 AATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAA 349976 | || | | | | || | || || | |||| | || | ||||| || | Sbjct 139233 AGTTCACCAGAAAGACCAAGAAGGACATGTCCAACGATCCCCGTGCCCTCCGTCGTCTTA 139174 Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTAC--TACCCAAACCTCTATTGA 350034 ||||||| || |||||||||||||| | | || | || | || ||| |||| Sbjct 139173 GAACTGCTTGCGAACGTGCTAAGCGAAC--TCTCTCCAACGGTGCCTCCACCAACGTTGA 139116 Query 350035 AATTGATTCTCTTGCT-GATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTG 350093 ||||| || |||| | ||||| | || ||| | | || || |||||| | || | Sbjct 139115 GATTGACTC-CTTGTTCGATGGTGAGGACTTCAATGCTCAAATCACCCGTGCTAGATTCG 139057 Query 350094 AAGA-ATTA--TGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAA 350150 |||| ||| | | || ||| | | || |||| ||||| | | || | | Sbjct 139056 AAGACCTTAACTCCAAGG---CTTTCAACGGTACTTTGGAGCCTGTTGCTCAGGTTCTCA 139000 Query 350151 AAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACAC 350210 | ||||| || | || | || ||||||| | ||| | |||||||||||||| | Sbjct 138999 AGGATGCCAACCTTGATAAGAGCAAGGTTGATGAGATCGTTCTTGTTGGTGGTTCTACCC 138940 Query 350211 GTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGAT 350270 |||| |||| | ||||| || | | |||||| || |||| |||||| || ||| Sbjct 138939 GTATCCCAAGAATTCAAAAGCTCTTGAGTGAGTTCTTCGATGG-AAAGAA-GTTGGAGAA 138882 Query 350271 CA--ATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATC 350328 | || || || ||||| |||||||| || ||||| ||||| || || ||| | || Sbjct 138881 GAGCATCAACCCTGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAAGCTGGTATCCTTTC 138822 Query 350329 TGGAAA 350334 ||||| Sbjct 138821 CGGAAA 138816 Score = 84.2 bits (92), Expect = 7e-11 Identities = 110/152 (72%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 377443 AATATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCA 377502 || ||||| | || ||||| |||||| | ||||| ||| || || | | ||||| Sbjct 1098263 AAAATTTCCTTAAGACGTGGAACACCAAGGGTAACGTTC---TTGGACGAGATACCAGTG 1098319 Query 377503 AAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATA 377562 || ||||| || || | || | ||| || | || |||||||| ||||| || |||| Sbjct 1098320 AAATGGAAGGTGTTCAAGGTCATTTGTGTGGCTGGTTCACCAATAGACTGTGCAGCAAGC 1098379 Query 377563 ACGCCAACCATTTCTCCAGGATTGACAATAGC 377594 || |||||||| || ||||||||||| | ||| Sbjct 1098380 ACACCAACCATCTCACCAGGATTGACCAAAGC 1098411 >seq17 Length=875485 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 ||||| || || ||||| || | || || || ||||| | ||| |||||||| ||||| Sbjct 658243 TTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAGATC 658184 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 | |||||| ||||| ||||||||||| || || ||||| || || | || ||||| || Sbjct 658183 AAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 658124 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 || | || || | || || ||||| || | ||||| || || || || || || || Sbjct 658123 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 658065 >seq13 Length=1254118 Score = 96.9 bits (106), Expect = 1e-14 Identities = 218/327 (67%), Gaps = 3/327 (1%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || ||||||||| | || ||| |||| | || | || || || | || ||| ||||| Sbjct 582378 AAGATGAAGGAAGTCGCCGAATCATACCTCGGAAAGACTGTTACCCACGCAGTTGTTACT 582437 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || |||||||| || || || ||| | || || || ||||| || | |||||| Sbjct 582438 GTTCCAGCCTACTTCAACGACAACCAAAGACAAGCCACCAAGGATGCCGGTATCATTGCC 582497 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || || || ||||| | || | || ||||| || || ||||| ||||| || || | Sbjct 582498 GGTTTGAACGTTCTCCGTATCGTCAACGAACCTACCGCCGCAGCTATTGCCTACGGTTTG 582557 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || || || ||| ||| | ||| || | | |||| | ||||| || || || Sbjct 582558 GACAA---GACTGAAGGTGAACGTCAAATTATTGTCTATGATCTCGGTGGAGGAACCTTC 582614 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 ||||| || || || | |||| || | ||||| ||| | ||||| ||||| Sbjct 582615 GATGTTTCTCTTCTCTCCATTGATCGTGGTGTCTTTGAGGTTCTTTCTACTGCCGGTGAC 582674 Query 349862 ACACATCTTGGTGGAGAAGATTTTGAT 349888 || || | || ||||||||||| ||| Sbjct 582675 ACTCACTTGGGAGGAGAAGATTTCGAT 582701 Score = 95.1 bits (104), Expect = 4e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 182904 TTTTCAAGTGCGCTAACATTTAAAATACCATTAGAGTCAACATCAAATGATACTTCAATC 182963 || ||| |||| |||| ||||| || || || | ||||| || || || || ||||| Sbjct 583471 TTGTCACCTGCGGTAACCTTTAAGATTCCGTTGGCGTCAAGCTCGAAAGAAACCTCAATT 583412 Query 182964 TGTGGAACACCTCGTGGCATTGGTGGAATTCCAGTTAAAGTAAATTCACCTAATTTATTA 183023 ||||||||||| ||||| ||||||||| || || || |||| ||| | || || Sbjct 583411 TGTGGAACACCACGTGGTGCTGGTGGAATACCGGTCAACTCGAATTTACCGAGGTTGTTG 583352 Query 183024 TTATCTTTAGTTCTTGCTCTCTCGCCTTCATATACTTGAATAGTAACTGCTGGCTGATTA 183083 || ||||| || ||| ||| || || ||||| ||||| || || |||| || ||| Sbjct 583351 TTGTCTTTTGTCATTGTTCTTTCTCCCTCATAGACTTGGATCAAGACAACTGGTTGGTTA 583292 Query 183084 TC 183085 || Sbjct 583291 TC 583290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515246129552078