Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq38 158 1e-33 seq35 111 2e-19 >seq38 Length=269250 Score = 158 bits (174), Expect = 1e-33 Identities = 364/543 (67%), Gaps = 4/543 (1%) Strand=Plus/Plus Query 19165 CGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAA 19224 ||| |||||| || ||||| | |||| |||||| || || |||| || || ||| Sbjct 55433 CGAAACATACAACTTGATGTCAAACAAGTACTTCACACATGCCTCGCCAACACTCTTCTC 55492 Query 19225 CGCCGGTACGA-ACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACA 19283 || ||||| |||| | || | || || ||||| | | |||||||| |||| Sbjct 55493 TGCGGGTACTCCACAAGCA-CAACTTTCATCATGCTTCCTTATCGACATGAAGGAGGACA 55551 Query 19284 GCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGG 19343 | ||||| || || ||||| || | ||| || || ||||| ||| |||| | Sbjct 55552 GTATTGATGGTATTTACGATACTTTGAAGATTTGTGCTATGATCTCAAAGAATGCCGGTG 55611 Query 19344 GTATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAAC 19402 |||| || || || | | | | ||||| | | ||| || || || || ||| Sbjct 55612 GTATTGGTCTCAACATTCACCGA-ATCCGTGCTACTGGCGCATACATTGCCGGTACCAAC 55670 Query 19403 GGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTC 19462 ||| | |||||||||| || |||||||| || ||||||||||| ||||| || || Sbjct 55671 GGAAACTCTAACGGTATCGTTCCTATGCTCCGAGTTTTCAACAACACTGCCAGATATGTT 55730 Query 19463 AACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCG 19522 | || || || || || || | || || | ||||| ||||||||||| ||| Sbjct 55731 GATCAAGGTGGTAATAAGCGTCCTGGTGCCTTTGCTGTTTACCTTGAGCCATGGCATGCG 55790 Query 19523 GACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGC 19582 || || | || ||||| || || ||| || || || | || || | || ||| Sbjct 55791 GATGTTTTTGAGTTCCTTGATCTACGCAAAAATCATGGCAAAGAAGAAGTTCGTGCACGC 55850 Query 19583 GACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAA 19642 || |||||| |||||||||||||| || ||||||||| || ||||| ||| | | Sbjct 55851 GATCTCTTCTACGCCTTGTGGATTCCTGATCTATTCATGAAGCGTGTTGAAAAGAATGGG 55910 Query 19643 GAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCG 19702 || ||| || |||||||| ||||||| || || || | || || || ||||||| | Sbjct 55911 GATTGGACTCTCATGTGCCCCAACGAATGTCCAGGTTTAGCAGATGTTTATGGCGAGGAG 55970 Query 19703 TTC 19705 ||| Sbjct 55971 TTC 55973 Score = 150 bits (166), Expect = 2e-31 Identities = 826/1310 (63%), Gaps = 46/1310 (4%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||||||||| | ||||| || |||||| |||||| || | || |||| || Sbjct 56750 GTAGATGTTTGAAGTGTAAGGTTCGAAACATTCGTTGAAGCCAAGAATTTGGGATGTGCT 56691 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653 || || ||||| ||||| || || ||||| || || | || || |||||| Sbjct 56690 AGCAGTAGGCATAGGTGCAACTAGGAGAGAGTTGCGGATTCCGTGTTGCTTGATGGATTG 56631 Query 78654 CTTTAGGCCGTCCCAA------AATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAG 78707 ||| | ||||||| || ||| | | | | ||||||||| || |||||| Sbjct 56630 CTTCAAAGAGTCCCAATCCCACAAATCAGTAGGTGTAACCCCCCACATATCGTATTGAAG 56571 Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGA-ACGTCTCGTAAGATCCCTCCTCCTTGGCGA 78766 ||||| || | || || || |||| | || ||||| | || ||||| |||| Sbjct 56570 TTCACCCTTAGAGACTGGGGAGCC-TTGATAGGTTTCGTATGGGCCAAGTTCCTTTGCGA 56512 Query 78767 GTTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCT 78826 ||| || | || ||| |||||||| | | |||||| || ||||||| | Sbjct 56511 TCTCGACGGAAGAGGTCAAGGCAGCGTGGTAGATGGTCTCGAAAATTTGTATGTTGAGGT 56452 Query 78827 CGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCT 78886 || | | ||| || | ||| | || || ||| |||| || || || | Sbjct 56451 GTTTGGCTTCTGGAGAGTCAAATGGAAGACGAAGAGCCAAGAAAGCATCAGCAAGACCTT 56392 Query 78887 GGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGT 78946 | || || | |||||| ||||| || || | ||||| ||||||||| | || || | Sbjct 56391 GAACACCAACAGCGATAGGTCGATGACGGAAATTGCTTTTTCGGGCCTCTGCGACTGGAT 56332 Query 78947 AAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACA 79006 | |||| || || | |||| ||| | || || | ||||||| | Sbjct 56331 AGTAGTTGATGTCAATAATCTTATTCAAGTTTCTAACAACAACTTGGACAACCTCGTGAA 56272 Query 79007 ATTTGGCGAAATCAAAA------TGATTTCCTTTGATGAAAGTCGGTAGGCACAGCGATG 79060 || ||||||| || | ||| |||| |||||| |||| ||||||| Sbjct 56271 GCTTTTGGAAATCATAAGTTCCCTCATTCATGTTGACGAAAGTTGGTAA----AGCGATG 56216 Query 79061 ----CCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 ||| ||| || || ||| || || ||| ||| | ||||||||||||| Sbjct 56215 GAAGCCAAGTTACAGCAAGCAACCTCATCTGGTGCAGAGTACTCAACGATTTCTGTGCAC 56156 Query 79117 AAATTAGA----CGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGC 79172 ||||| || ||| || || || | |||||| ||||||||||||| ||| || || Sbjct 56155 AAATTGGAGCTGCGA----ATAGTACCCAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGC 56100 Query 79173 GTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCA 79232 |||||||| |||| | || | |||||||| ||| || |||| | || ||| Sbjct 56099 ATCCTTGTAAAGCATGAAGGGATTTCCGGTCTCGGTTTGAGCCTCAAGAATGGAGTACCA 56040 Query 79233 GATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTG---TGCGA---CGTACGTCCG 79286 | | | ||| || | ||||| ||||||| ||| |||| | Sbjct 56039 AAGTTTTTGAGCCTTGATAG---TCTTG---CGACCCTTGCCTGCCTTTTCGTAACCCTC 55986 Query 79287 GTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCA 79346 ||| | | | ||| |||| ||||| ||||| | | || || || |||| ||||| Sbjct 55985 GTAGAGAGCCTCGAACTCCTCGCCATAAACATCTGCTAAACCTGGACATTCGTTGGGGCA 55926 Query 79347 CATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAG 79406 ||| || ||| ||| | | ||| ||||| || |||||| || || || ||||||| Sbjct 55925 CATGAGAGTCCAATCCCCATTCTTTTCAACACGCTTCATGAATAGATCAGGAATCCACAA 55866 Query 79407 GGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAG 79466 ||| |||||| ||||| ||| | || || | ||| || || || || || || Sbjct 55865 GGCGTAGAAGAGATCGCGTGCACGAACTTCTTCTTTGCCATGATTTTTGCGTAGATCAAG 55806 Query 79467 AAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTT 79526 || || | | || || ||||| ||||| || || | || || | ||| ||||| Sbjct 55805 GAACTCAAAAACATCCGCATGCCATGGCTCAAGGTAAACAGCAAAGGCACCAGGACGCTT 55746 Query 79527 GCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGAT 79586 || || || | || || | ||| ||||||||||||||||||||||| || ||||| Sbjct 55745 ATTACCACCTTGATCAACATATCTGGCAGTGTTGTTGAAAACTCGGAGCATAGGAACGAT 55686 Query 79587 GCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA 79646 |||| | | ||||| || ||| || || || | || || || | | | | Sbjct 55685 ACCGTTAGAGTTTCCGTTGGTACCGGCAATGTATGCGCCAGTAGCACGGAT-TCGGTGAA 55627 Query 79647 -GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGT 79705 || || || || || |||| ||| ||||| || || ||| | || |||| Sbjct 55626 TGTTGAGACCAATACCACCGGCATTCTTTGAGATCATAGCACAAATCTTCAAAGTATCGT 55567 Query 79706 AGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGT 79765 | || || || || ||| |||||||| ||| |||||||| || | ||| | | Sbjct 55566 AAATACCATCAATACTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGTTGT-GCT 55508 Query 79766 TGT-TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTT 79814 ||| ||||| || |||||| || |||| || || |||||| |||| Sbjct 55507 TGTGGAGTACCCGCAGAGAAGAGTGTTGGCGAGGCATGTGTGAAGTACTT 55458 >seq35 Length=307329 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 ||||| |||||||| | || || || ||| ||||| ||||||||||| || || ||| Sbjct 74109 TTTGCTCAACGTCTTGTCGCATTCGCTGCCGTTGAAGGCATCTTCTTCTCCGGATCCTTC 74168 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 |||| ||||||||||| |||||||| || ||| | || || | ||||||||||| Sbjct 74169 GCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTTATGGCCGGACTCACCTTCTCCAACGAA 74228 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCA 60118 || || ||||| ||||| || ||||| Sbjct 74229 CTCATCTCCCGTGACGAAGGTCTCCA 74254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548521879105440