Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq38 158 1e-33
seq35 111 2e-19
>seq38
Length=269250
Score = 158 bits (174), Expect = 1e-33
Identities = 364/543 (67%), Gaps = 4/543 (1%)
Strand=Plus/Plus
Query 19165 CGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAA 19224
||| |||||| || ||||| | |||| |||||| || || |||| || || |||
Sbjct 55433 CGAAACATACAACTTGATGTCAAACAAGTACTTCACACATGCCTCGCCAACACTCTTCTC 55492
Query 19225 CGCCGGTACGA-ACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACA 19283
|| ||||| |||| | || | || || ||||| | | |||||||| ||||
Sbjct 55493 TGCGGGTACTCCACAAGCA-CAACTTTCATCATGCTTCCTTATCGACATGAAGGAGGACA 55551
Query 19284 GCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGG 19343
| ||||| || || ||||| || | ||| || || ||||| ||| |||| |
Sbjct 55552 GTATTGATGGTATTTACGATACTTTGAAGATTTGTGCTATGATCTCAAAGAATGCCGGTG 55611
Query 19344 GTATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAAC 19402
|||| || || || | | | | ||||| | | ||| || || || || |||
Sbjct 55612 GTATTGGTCTCAACATTCACCGA-ATCCGTGCTACTGGCGCATACATTGCCGGTACCAAC 55670
Query 19403 GGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTC 19462
||| | |||||||||| || |||||||| || ||||||||||| ||||| || ||
Sbjct 55671 GGAAACTCTAACGGTATCGTTCCTATGCTCCGAGTTTTCAACAACACTGCCAGATATGTT 55730
Query 19463 AACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCG 19522
| || || || || || || | || || | ||||| ||||||||||| |||
Sbjct 55731 GATCAAGGTGGTAATAAGCGTCCTGGTGCCTTTGCTGTTTACCTTGAGCCATGGCATGCG 55790
Query 19523 GACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGC 19582
|| || | || ||||| || || ||| || || || | || || | || |||
Sbjct 55791 GATGTTTTTGAGTTCCTTGATCTACGCAAAAATCATGGCAAAGAAGAAGTTCGTGCACGC 55850
Query 19583 GACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAA 19642
|| |||||| |||||||||||||| || ||||||||| || ||||| ||| | |
Sbjct 55851 GATCTCTTCTACGCCTTGTGGATTCCTGATCTATTCATGAAGCGTGTTGAAAAGAATGGG 55910
Query 19643 GAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCG 19702
|| ||| || |||||||| ||||||| || || || | || || || ||||||| |
Sbjct 55911 GATTGGACTCTCATGTGCCCCAACGAATGTCCAGGTTTAGCAGATGTTTATGGCGAGGAG 55970
Query 19703 TTC 19705
|||
Sbjct 55971 TTC 55973
Score = 150 bits (166), Expect = 2e-31
Identities = 826/1310 (63%), Gaps = 46/1310 (4%)
Strand=Plus/Minus
Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593
||||||||| | ||||| || |||||| |||||| || | || |||| ||
Sbjct 56750 GTAGATGTTTGAAGTGTAAGGTTCGAAACATTCGTTGAAGCCAAGAATTTGGGATGTGCT 56691
Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653
|| || ||||| ||||| || || ||||| || || | || || ||||||
Sbjct 56690 AGCAGTAGGCATAGGTGCAACTAGGAGAGAGTTGCGGATTCCGTGTTGCTTGATGGATTG 56631
Query 78654 CTTTAGGCCGTCCCAA------AATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAG 78707
||| | ||||||| || ||| | | | | ||||||||| || ||||||
Sbjct 56630 CTTCAAAGAGTCCCAATCCCACAAATCAGTAGGTGTAACCCCCCACATATCGTATTGAAG 56571
Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGA-ACGTCTCGTAAGATCCCTCCTCCTTGGCGA 78766
||||| || | || || || |||| | || ||||| | || ||||| ||||
Sbjct 56570 TTCACCCTTAGAGACTGGGGAGCC-TTGATAGGTTTCGTATGGGCCAAGTTCCTTTGCGA 56512
Query 78767 GTTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCT 78826
||| || | || ||| |||||||| | | |||||| || ||||||| |
Sbjct 56511 TCTCGACGGAAGAGGTCAAGGCAGCGTGGTAGATGGTCTCGAAAATTTGTATGTTGAGGT 56452
Query 78827 CGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCT 78886
|| | | ||| || | ||| | || || ||| |||| || || || |
Sbjct 56451 GTTTGGCTTCTGGAGAGTCAAATGGAAGACGAAGAGCCAAGAAAGCATCAGCAAGACCTT 56392
Query 78887 GGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGT 78946
| || || | |||||| ||||| || || | ||||| ||||||||| | || || |
Sbjct 56391 GAACACCAACAGCGATAGGTCGATGACGGAAATTGCTTTTTCGGGCCTCTGCGACTGGAT 56332
Query 78947 AAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACA 79006
| |||| || || | |||| ||| | || || | ||||||| |
Sbjct 56331 AGTAGTTGATGTCAATAATCTTATTCAAGTTTCTAACAACAACTTGGACAACCTCGTGAA 56272
Query 79007 ATTTGGCGAAATCAAAA------TGATTTCCTTTGATGAAAGTCGGTAGGCACAGCGATG 79060
|| ||||||| || | ||| |||| |||||| |||| |||||||
Sbjct 56271 GCTTTTGGAAATCATAAGTTCCCTCATTCATGTTGACGAAAGTTGGTAA----AGCGATG 56216
Query 79061 ----CCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116
||| ||| || || ||| || || ||| ||| | |||||||||||||
Sbjct 56215 GAAGCCAAGTTACAGCAAGCAACCTCATCTGGTGCAGAGTACTCAACGATTTCTGTGCAC 56156
Query 79117 AAATTAGA----CGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGC 79172
||||| || ||| || || || | |||||| ||||||||||||| ||| || ||
Sbjct 56155 AAATTGGAGCTGCGA----ATAGTACCCAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGC 56100
Query 79173 GTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCA 79232
|||||||| |||| | || | |||||||| ||| || |||| | || |||
Sbjct 56099 ATCCTTGTAAAGCATGAAGGGATTTCCGGTCTCGGTTTGAGCCTCAAGAATGGAGTACCA 56040
Query 79233 GATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTG---TGCGA---CGTACGTCCG 79286
| | | ||| || | ||||| ||||||| ||| |||| |
Sbjct 56039 AAGTTTTTGAGCCTTGATAG---TCTTG---CGACCCTTGCCTGCCTTTTCGTAACCCTC 55986
Query 79287 GTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCA 79346
||| | | | ||| |||| ||||| ||||| | | || || || |||| |||||
Sbjct 55985 GTAGAGAGCCTCGAACTCCTCGCCATAAACATCTGCTAAACCTGGACATTCGTTGGGGCA 55926
Query 79347 CATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAG 79406
||| || ||| ||| | | ||| ||||| || |||||| || || || |||||||
Sbjct 55925 CATGAGAGTCCAATCCCCATTCTTTTCAACACGCTTCATGAATAGATCAGGAATCCACAA 55866
Query 79407 GGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAG 79466
||| |||||| ||||| ||| | || || | ||| || || || || || ||
Sbjct 55865 GGCGTAGAAGAGATCGCGTGCACGAACTTCTTCTTTGCCATGATTTTTGCGTAGATCAAG 55806
Query 79467 AAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTT 79526
|| || | | || || ||||| ||||| || || | || || | ||| |||||
Sbjct 55805 GAACTCAAAAACATCCGCATGCCATGGCTCAAGGTAAACAGCAAAGGCACCAGGACGCTT 55746
Query 79527 GCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGAT 79586
|| || || | || || | ||| ||||||||||||||||||||||| || |||||
Sbjct 55745 ATTACCACCTTGATCAACATATCTGGCAGTGTTGTTGAAAACTCGGAGCATAGGAACGAT 55686
Query 79587 GCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA 79646
|||| | | ||||| || ||| || || || | || || || | | | |
Sbjct 55685 ACCGTTAGAGTTTCCGTTGGTACCGGCAATGTATGCGCCAGTAGCACGGAT-TCGGTGAA 55627
Query 79647 -GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGT 79705
|| || || || || |||| ||| ||||| || || ||| | || ||||
Sbjct 55626 TGTTGAGACCAATACCACCGGCATTCTTTGAGATCATAGCACAAATCTTCAAAGTATCGT 55567
Query 79706 AGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGT 79765
| || || || || ||| |||||||| ||| |||||||| || | ||| | |
Sbjct 55566 AAATACCATCAATACTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGTTGT-GCT 55508
Query 79766 TGT-TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTT 79814
||| ||||| || |||||| || |||| || || |||||| ||||
Sbjct 55507 TGTGGAGTACCCGCAGAGAAGAGTGTTGGCGAGGCATGTGTGAAGTACTT 55458
>seq35
Length=307329
Score = 111 bits (122), Expect = 2e-19
Identities = 112/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032
||||| |||||||| | || || || ||| ||||| ||||||||||| || || |||
Sbjct 74109 TTTGCTCAACGTCTTGTCGCATTCGCTGCCGTTGAAGGCATCTTCTTCTCCGGATCCTTC 74168
Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092
|||| ||||||||||| |||||||| || ||| | || || | |||||||||||
Sbjct 74169 GCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTTATGGCCGGACTCACCTTCTCCAACGAA 74228
Query 60093 CTGATTTCCCGGGACGAGGGCCTCCA 60118
|| || ||||| ||||| || |||||
Sbjct 74229 CTCATCTCCCGTGACGAAGGTCTCCA 74254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548521879105440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |