Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq38 141 1e-28
>seq38
Length=269250
Score = 141 bits (156), Expect = 1e-28
Identities = 395/596 (66%), Gaps = 14/596 (2%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC--TACACGCG-TGTCCGTGAGACGT 53249
||||||| || ||| | ||||| |||||||| || | | | | | || || || |
Sbjct 55384 TCATGCGTGTTGCCGTTGGTATTCACGGTGATGATATTGAAAGTGCTATC---GAAACAT 55440
Query 53250 ACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309
|| |||| ||| | |||||||| || || ||| ||||||| || ||| || ||||
Sbjct 55441 ACAACTTGATGTCAAACAAGTACTTCACACATGCCTCGCCAACACTCTTCTCTGCGGGTA 55500
Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369
| || | || | || |||||||| | | |||||||| ||| || || |
Sbjct 55501 CTCCACAAGCACAACTTTCATCATGCTTCCTTATCGACATGAAGGAGGACAGTATTGATG 55560
Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429
| || ||||| || | ||| ||||| ||||| ||| | |||||||| |||
Sbjct 55561 GTATTTACGATACTTTGAAGATTTGTGCTATGATCTCAAAGAATGCCGGTGGTATTGGTC 55620
Query 53430 TCCAC--TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487
|| || | |||| ||||||| | ||| || || || || ||||| | |
Sbjct 55621 TCAACATTCACCGAA--TCCGTGCTACTGGCGCATACATTGCCGGTACCAACGGAAACTC 55678
Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547
| || ||||| ||||||||||| || ||||||||||| ||| | || || | || ||
Sbjct 55679 TAACGGTATCGTTCCTATGCTCCGAGTTTTCAACAACACTGCCAGATATGTTGATCAAGG 55738
Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607
|||| ||||| || | || || | ||||| ||||| ||||| || || || |
Sbjct 55739 TGGTAATAAGCGTCCTGGTGCCTTTGCTGTTTACCTTGAGCCATGGCATGCGGATGTTTT 55798
Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGT 53666
||||| || || || || ||||| || | ||||| | || ||| || || || |
Sbjct 55799 TGAGTTCCTTGATCTACGCAAAAATCATGGCAAAGAAGAAGTTCG-TGCACGCGATCTCT 55857
Query 53667 T-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGG 53725
| ||| || |||||||||| || || |||||| | || || ||| | | ||| |||
Sbjct 55858 TCTAC-GCCTTGTGGATTCCTGATCTATTCATGAAGCGTGTTGAAAAGAATGGGGATTGG 55916
Query 53726 TACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781
|| |||||||| ||||| || || || | | ||| || || ||||||||
Sbjct 55917 ACTCTCATGTGCCCCAACGAATGTCCAGGTTTAGCAGATGTTTATGGCGAGGAGTT 55972
Score = 82.4 bits (90), Expect = 8e-11
Identities = 139/198 (70%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACA--GAAGAGTCTGATTGACATGAG 55785
|||||| ||||| ||| || ||||| || | || ||| | | || || | |||
Sbjct 56902 TCAAGGCTCTTTACAAGACTGTTTGGGAAATCTCCCAACGAACAAT-TG-TTCAAATGGC 56959
Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845
||||||||||||||| | ||| || || || || || ||||||| |||| || ||||
Sbjct 56960 TGCTGATCGTGGTGCATTCATTGATCAATCTCAATCAATGAACATTCACATGAAGGATCC 57019
Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905
| || ||| |||| | | || ||||| ||| || ||||| ||| | ||||| ||
Sbjct 57020 TACAATGGGCAAGATTACATCCATGCATTTTGCTGGTTGGAAATTGGGTTTGAAGACCGG 57079
Query 55906 TATGTACTATCTGCGGAC 55923
||||||||| | || ||
Sbjct 57080 AATGTACTATTTACGTAC 57097
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547213086074800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |