Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq38 141 1e-28 >seq38 Length=269250 Score = 141 bits (156), Expect = 1e-28 Identities = 395/596 (66%), Gaps = 14/596 (2%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC--TACACGCG-TGTCCGTGAGACGT 53249 ||||||| || ||| | ||||| |||||||| || | | | | | || || || | Sbjct 55384 TCATGCGTGTTGCCGTTGGTATTCACGGTGATGATATTGAAAGTGCTATC---GAAACAT 55440 Query 53250 ACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 || |||| ||| | |||||||| || || ||| ||||||| || ||| || |||| Sbjct 55441 ACAACTTGATGTCAAACAAGTACTTCACACATGCCTCGCCAACACTCTTCTCTGCGGGTA 55500 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 | || | || | || |||||||| | | |||||||| ||| || || | Sbjct 55501 CTCCACAAGCACAACTTTCATCATGCTTCCTTATCGACATGAAGGAGGACAGTATTGATG 55560 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 | || ||||| || | ||| ||||| ||||| ||| | |||||||| ||| Sbjct 55561 GTATTTACGATACTTTGAAGATTTGTGCTATGATCTCAAAGAATGCCGGTGGTATTGGTC 55620 Query 53430 TCCAC--TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 || || | |||| ||||||| | ||| || || || || ||||| | | Sbjct 55621 TCAACATTCACCGAA--TCCGTGCTACTGGCGCATACATTGCCGGTACCAACGGAAACTC 55678 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | || ||||| ||||||||||| || ||||||||||| ||| | || || | || || Sbjct 55679 TAACGGTATCGTTCCTATGCTCCGAGTTTTCAACAACACTGCCAGATATGTTGATCAAGG 55738 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 |||| ||||| || | || || | ||||| ||||| ||||| || || || | Sbjct 55739 TGGTAATAAGCGTCCTGGTGCCTTTGCTGTTTACCTTGAGCCATGGCATGCGGATGTTTT 55798 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGT 53666 ||||| || || || || ||||| || | ||||| | || ||| || || || | Sbjct 55799 TGAGTTCCTTGATCTACGCAAAAATCATGGCAAAGAAGAAGTTCG-TGCACGCGATCTCT 55857 Query 53667 T-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGG 53725 | ||| || |||||||||| || || |||||| | || || ||| | | ||| ||| Sbjct 55858 TCTAC-GCCTTGTGGATTCCTGATCTATTCATGAAGCGTGTTGAAAAGAATGGGGATTGG 55916 Query 53726 TACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781 || |||||||| ||||| || || || | | ||| || || |||||||| Sbjct 55917 ACTCTCATGTGCCCCAACGAATGTCCAGGTTTAGCAGATGTTTATGGCGAGGAGTT 55972 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACA--GAAGAGTCTGATTGACATGAG 55785 |||||| ||||| ||| || ||||| || | || ||| | | || || | ||| Sbjct 56902 TCAAGGCTCTTTACAAGACTGTTTGGGAAATCTCCCAACGAACAAT-TG-TTCAAATGGC 56959 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 ||||||||||||||| | ||| || || || || || ||||||| |||| || |||| Sbjct 56960 TGCTGATCGTGGTGCATTCATTGATCAATCTCAATCAATGAACATTCACATGAAGGATCC 57019 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | || ||| |||| | | || ||||| ||| || ||||| ||| | ||||| || Sbjct 57020 TACAATGGGCAAGATTACATCCATGCATTTTGCTGGTTGGAAATTGGGTTTGAAGACCGG 57079 Query 55906 TATGTACTATCTGCGGAC 55923 ||||||||| | || || Sbjct 57080 AATGTACTATTTACGTAC 57097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213086074800