Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3 176 5e-39 seq18 167 3e-36 seq38 163 3e-35 seq17 131 2e-25 seq35 125 8e-24 seq31 104 3e-17 >seq3 Length=2676204 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| |||||||| ||||| || ||| | |||||||| ||| Sbjct 1950005 ATGCAGATCTTCGTCAAGACCCTTACCGGAAAGACAATCACTTTGGAGGTTGAATCATCG 1949946 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| ||||| | || || || || |||||||| || || || || || Sbjct 1949945 GATACCATCGACAATGTGAAGTCAAAGATCCAAGATAAGGAGGGTATCCCACCCGATCAA 1949886 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||||||||||||||| ||||||| |||||| || | || || || Sbjct 1949885 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGTCGTACACTTTCGGATTACAAC 1949826 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| ||| | ||| | ||| | ||||| || ||||| Sbjct 1949825 ATTCAAAAGGAATCGACTTTACATTTGGTCCTTCGTCTCCGTGGTGG 1949779 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| ||||||||||| || ||||||||||| | || | ||| | ||| | ||| | Sbjct 1950492 ACCGGTAAGACTATTACCCTCGAGGTTGAGTCCAGCGACACCATCGACAATGTCAAGTCC 1950433 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||||||||||||||| ||||| |||||| | ||||| || || || Sbjct 1950432 AAGATCCAGGACAAGGAGGGAATTCCTCCCGACCAACAGCGTTTGATTTTCGCCGGAAAA 1950373 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||| || |||| ||| ||| | ||||| || |||| || || || ||||| || Sbjct 1950372 CAACTTGAAGATGGTCGCACCTTGAGTGACTACAACATCCAGAAAGAGTCTACTCTCCAC 1950313 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | ||| | | ||||| ||||| Sbjct 1950312 TTGGTCCTCAGACTTCGTGGTGG 1950290 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| | || |||||||| ||||| | ||||| || || Sbjct 1949777 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATTACATTAGAGGTGGAATCGTCA 1949718 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | || | || ||||||||||||||||| ||||| || || || Sbjct 1949717 GATACCATTGATAATGTAAAATCAAAGATTCAGGACAAGGAGGGCATTCCACCTGATCAA 1949658 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | || ||||| || |||||| | ||||| | | ||||| | || || ||| Sbjct 1949657 CAACGATTGATCTTTGCAGGAAAGCAATTGGAGGACGGCAGAACCCTTTCGGATTACAAT 1949598 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 | ||||||||| ||| | || | || | |||||||| ||||| ||| Sbjct 1949597 ATTCAAAAGGAAAGCACCTTGCACTTGGTGCTCCGTCTTCGTGGTGGTCAA 1949547 >seq18 Length=865119 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || ||||| || || || || ||||||||||| Sbjct 543247 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCC 543306 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || || |||||||||||||||||||| || ||||| Sbjct 543307 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCCGACCAA 543366 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||||||||| |||| || ||||| | || || || Sbjct 543367 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTTTCCGATTACAAC 543426 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||||||||| | || || ||||| || ||||| Sbjct 543427 ATCCAAAAGGAGTCCACTCTTCACTTGGTGTTACGTCTCCGTGGTGG 543473 >seq38 Length=269250 Score = 163 bits (180), Expect = 3e-35 Identities = 527/811 (65%), Gaps = 33/811 (4%) Strand=Plus/Minus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| |||||||| ||||||||||| || ||| ||||||||||| || ||||| Sbjct 56175 ACTCAACGATTTCTGTGCACAAATTGGAGCTGCGAATAGTACCCAGGTTCTTTTGGTTGC 56116 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| || |||||||| |||| | || | ||||||||| || | || Sbjct 56115 TCTTCTTGTTGCATGCATCCTTGTAAAGCATGAAGGGATTTCCGGTCTCGGTTTGAGCCT 56056 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCA 81127 || |||| || ||||| | | ||||||| |||||| |||||| | Sbjct 56055 CAAGAATGGAGTACCAAAGTTTTTGAGCCTTGATAGTCTTGCGACCCTTGCCTGC----- 56001 Query 81128 CATACTTGGCGTAAGCTTCGT---------CGAACTTGGCACCGTGAAGTTCAGTGAGGT 81178 ||| ||||| | |||| |||||| | || | || || | | Sbjct 56000 ----CTTTTCGTAACCCTCGTAGAGAGCCTCGAACTCCTCGCCATAAACATCTGCTAAAC 55945 Query 81179 CTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGA 81238 |||| || ||||| |||||||| || ||| || | || || ||| |||||||| Sbjct 55944 CTGGACATTCGTTGGGGCACATGAGAGTCCAATCCCCATTCTTTTCAACACGCTTCATGA 55885 Query 81239 AAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCC 81297 | ||||| ||||| | |||| ||| || ||||| ||| || | || || | || Sbjct 55884 ATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCA-CGAACTTCTTCTTTGCCA 55826 Query 81298 TGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACG 81357 || || ||| | || || || || | | ||||||||||||||||| || || || Sbjct 55825 TGATTTTTGCGTAGATCAAGGAACTCAAAAACATCCGCATGCCATGGCTCAAGGTAAACA 55766 Query 81358 GCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAAT 81414 || | | || || | ||||| || | || || | |||||| ||| || Sbjct 55765 GCAAAGGCACCAGGACGCTTATTACCACCTTGATCAACATATCTGGCAGTGTTGTTGAAA 55706 Query 81415 ACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGAT--ACGCGACC 81472 || || | |||||| | |||||| | || | ||||| ||||| | || | ||| | Sbjct 55705 ACTCGGAGCATAGGAACGATACCGTTAGAGTTTCCGTTGGTACCGGCAATGTATGCG--C 55648 Query 81473 CCTTGGCGCGCACCTTGCTGATTGAA-AGACCGATGCCACCTGACCACTTTGAAATCTGA 81531 | | || || | | | ||| || ||||| || ||||| | |||||| ||| | Sbjct 55647 CAGTAGCACGGAT-TCGGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATA 55589 Query 81532 GCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAG 81591 ||||| |||| || || ||||| || || || || || | |||||||| | | | Sbjct 55588 GCACAAATCTTCAAAGTATCGTAAATACCATCAATACTGTCCTCCTTCATGTCGATAAGG 55529 Query 81592 AAACAGCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGT 81649 || || ||| | || | ||| | ||| || ||| ||| |||||||| | || | Sbjct 55528 AAGCATGATGAAAGTTGTG--CTTGTGGAGTACCCGCAGAGAAGAGTGTTGGCGAGGCAT 55471 Query 81650 GAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCAC 81709 | |||| || ||||||||||| || || ||||| | | | | |||||| |||| Sbjct 55470 GTGTGAAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCAATATCATCAC 55411 Query 81710 CGTGAATACCGATAGCTACACGCATAAACAT 81740 |||||||||| | || |||||||| | ||| Sbjct 55410 CGTGAATACCAACGGCAACACGCATGATCAT 55380 >seq17 Length=875485 Score = 131 bits (144), Expect = 2e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| ||||| |||||||| || || |||||||| ||||| || | ||| Sbjct 658064 CTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCAT 658123 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||| | || || ||||||||||||||||||||||| || || || ||| | Sbjct 658124 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCCGATCAACAACGTTT 658183 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || ||||| |||||| | || || | ||||| || |||| || || ||||||| Sbjct 658184 GATCTTCGCTGGAAAGCAATTGGAAGACGGACGTACTCTCTCAGATTACAACATCCAAAA 658243 Query 27594 GG 27595 || Sbjct 658244 GG 658245 >seq35 Length=307329 Score = 125 bits (138), Expect = 8e-24 Identities = 305/456 (67%), Gaps = 6/456 (1%) Strand=Plus/Plus Query 64708 TTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTC 64767 |||| ||| ||||| | || || || || ||||| || ||||| || || || ||| Sbjct 74109 TTTGCTCAACGTCTTGTCGCATTCGCTGCCGTTGAAGGCATCTTCTTCTCCGGATCCTTC 74168 Query 64768 TGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAG 64827 ||||| |||||||| || ||||| || || ||| | || || | || || ||||| Sbjct 74169 GCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTTATGGCCGGACTCACCTTCTCCAACGAA 74228 Query 64828 CTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTC 64887 || ||||| || ||||| || |||||| || || || ||| ||| ||| ||| Sbjct 74229 CTCATCTCCCGTGACGAAGGTCTCCACACCGATTTCGCATGCCTCCTCTTCTCCCATCTC 74288 Query 64888 AAGGACAAACCATCACATGGGA-CTATAATTGATATAGTAAAATCGGCTGTAGAAATTGA 64946 ||| || ||||| || | | | | || | | | ||| || | |||||| Sbjct 74289 AAGCACCGCCCATC-CAAGCAAGCCGTCCAAGACGTTATCACCGAGGCCGTCGCAATTGA 74347 Query 64947 AAAGGAATTCATTACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGAT 65006 | |||||| | || | || ||||| ||| ||| | |||||| | || || Sbjct 74348 GCAAGAATTCTTGACCGAGGCTCTTCCTTGTGCTCTTTTGGGCATGAACTCCACCCTCAT 74407 Query 65007 GAAACAGTATATCGAATTTGTAGCAGATCGCCTGCTTACTCAGTTTGGTATTAAGCCCTA 65066 ||| || || |||||||| || || ||||| || || | || ||||| | | | | | Sbjct 74408 GAAGCAATACATCGAATTCGTTGCTGATCGTCTCCTCA-TCGCTTTGGG-TAACGACAAA 74465 Query 65067 --CTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACT 65124 || || ||| | || |||||||||| ||||||| || | ||| || |||||| Sbjct 74466 GTCTACAAGTCTGCCAACCCATTTGACTTCATGGAGAACATTTCCTTGGCCGGCAAGACT 74525 Query 65125 AACTTTTTTGAAAAGAGGGTAGGTGATTACTCAAAG 65160 ||||| || |||||||| || ||||||||| |||| Sbjct 74526 AACTTCTTCGAAAAGAGAGTTGGTGATTACCAAAAG 74561 >seq31 Length=409871 Score = 104 bits (114), Expect = 3e-17 Identities = 186/269 (69%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 ||||| ||||| ||| |||| | || || || || || ||| ||||| ||||| | Sbjct 225415 GACGGTCTCAAACCTGGACAGAGGAAAGTTATGTATGCTTGCTTCAAGCGCAACCTCACA 225474 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAA---CGGCCTATCAC 32100 | ||| |||||||| | |||| | || || || ||| ||| ||||||||||| Sbjct 225475 AATGATATGAAGGTTGTTGAGCTTGCTGGTTATGT--CAGT-CAAGTCTCGGCCTATCAC 225531 Query 32101 CACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCA 32160 || ||||| || || | ||| |||||||| ||| || || || ||||| ||| | Sbjct 225532 CATGGCGAAGCTTCAATGCAGATGACCATTGTTGGCCTCGCACAAAATTTTGTTGGTTCG 225591 Query 32161 AATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAG 32220 |||||| | || | ||||||||| |||| | ||||| | | || || || | Sbjct 225592 AATAACGTCAATTGTCTCGAGCCAAGTGGAAATTTTGGTAGTAGACTTCAGGGAGGAAGC 225651 Query 32221 GATGCTGCGAGCTCCCGTTACATCTTCAC 32249 |||||||| ||| ||||||| || || || Sbjct 225652 GATGCTGCTAGCGCCCGTTATATTTTTAC 225680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307363097120