Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq3 176 5e-39
seq18 167 3e-36
seq38 163 3e-35
seq17 131 2e-25
seq35 125 8e-24
seq31 104 3e-17
>seq3
Length=2676204
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| |||||||| ||||| || ||| | |||||||| |||
Sbjct 1950005 ATGCAGATCTTCGTCAAGACCCTTACCGGAAAGACAATCACTTTGGAGGTTGAATCATCG 1949946
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | ||| ||||| | || || || || |||||||| || || || || ||
Sbjct 1949945 GATACCATCGACAATGTGAAGTCAAAGATCCAAGATAAGGAGGGTATCCCACCCGATCAA 1949886
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| || ||||||||||||||||| ||||||| |||||| || | || || ||
Sbjct 1949885 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGTCGTACACTTTCGGATTACAAC 1949826
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||||||||| ||| | ||| | ||| | ||||| || |||||
Sbjct 1949825 ATTCAAAAGGAATCGACTTTACATTTGGTCCTTCGTCTCCGTGGTGG 1949779
Score = 141 bits (156), Expect = 1e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||| ||||||||||| || ||||||||||| | || | ||| | ||| | ||| |
Sbjct 1950492 ACCGGTAAGACTATTACCCTCGAGGTTGAGTCCAGCGACACCATCGACAATGTCAAGTCC 1950433
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || ||||||||||||||||||||||| ||||| |||||| | ||||| || || ||
Sbjct 1950432 AAGATCCAGGACAAGGAGGGAATTCCTCCCGACCAACAGCGTTTGATTTTCGCCGGAAAA 1950373
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
||||| || |||| ||| ||| | ||||| || |||| || || || ||||| ||
Sbjct 1950372 CAACTTGAAGATGGTCGCACCTTGAGTGACTACAACATCCAGAAAGAGTCTACTCTCCAC 1950313
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
| ||| | | ||||| |||||
Sbjct 1950312 TTGGTCCTCAGACTTCGTGGTGG 1950290
Score = 138 bits (152), Expect = 1e-27
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||||||||| | || |||||||| ||||| | ||||| || ||
Sbjct 1949777 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATTACATTAGAGGTGGAATCGTCA 1949718
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | || | || ||||||||||||||||| ||||| || || ||
Sbjct 1949717 GATACCATTGATAATGTAAAATCAAAGATTCAGGACAAGGAGGGCATTCCACCTGATCAA 1949658
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| || | || ||||| || |||||| | ||||| | | ||||| | || || |||
Sbjct 1949657 CAACGATTGATCTTTGCAGGAAAGCAATTGGAGGACGGCAGAACCCTTTCGGATTACAAT 1949598
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636
| ||||||||| ||| | || | || | |||||||| ||||| |||
Sbjct 1949597 ATTCAAAAGGAAAGCACCTTGCACTTGGTGCTCCGTCTTCGTGGTGGTCAA 1949547
>seq18
Length=865119
Score = 167 bits (184), Expect = 3e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || || ||||| || || || || |||||||||||
Sbjct 543247 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCC 543306
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||| | || || |||||||||||||||||||| || |||||
Sbjct 543307 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCCGACCAA 543366
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || || || || ||||||||||| |||| || ||||| | || || ||
Sbjct 543367 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTTTCCGATTACAAC 543426
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| ||||||||||| | || || ||||| || |||||
Sbjct 543427 ATCCAAAAGGAGTCCACTCTTCACTTGGTGTTACGTCTCCGTGGTGG 543473
>seq38
Length=269250
Score = 163 bits (180), Expect = 3e-35
Identities = 527/811 (65%), Gaps = 33/811 (4%)
Strand=Plus/Minus
Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007
|||| |||||||| ||||||||||| || ||| ||||||||||| || |||||
Sbjct 56175 ACTCAACGATTTCTGTGCACAAATTGGAGCTGCGAATAGTACCCAGGTTCTTTTGGTTGC 56116
Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067
||| |||||| || |||||||| |||| | || | ||||||||| || | ||
Sbjct 56115 TCTTCTTGTTGCATGCATCCTTGTAAAGCATGAAGGGATTTCCGGTCTCGGTTTGAGCCT 56056
Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCA 81127
|| |||| || ||||| | | ||||||| |||||| |||||| |
Sbjct 56055 CAAGAATGGAGTACCAAAGTTTTTGAGCCTTGATAGTCTTGCGACCCTTGCCTGC----- 56001
Query 81128 CATACTTGGCGTAAGCTTCGT---------CGAACTTGGCACCGTGAAGTTCAGTGAGGT 81178
||| ||||| | |||| |||||| | || | || || | |
Sbjct 56000 ----CTTTTCGTAACCCTCGTAGAGAGCCTCGAACTCCTCGCCATAAACATCTGCTAAAC 55945
Query 81179 CTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGA 81238
|||| || ||||| |||||||| || ||| || | || || ||| ||||||||
Sbjct 55944 CTGGACATTCGTTGGGGCACATGAGAGTCCAATCCCCATTCTTTTCAACACGCTTCATGA 55885
Query 81239 AAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCC 81297
| ||||| ||||| | |||| ||| || ||||| ||| || | || || | ||
Sbjct 55884 ATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCA-CGAACTTCTTCTTTGCCA 55826
Query 81298 TGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACG 81357
|| || ||| | || || || || | | ||||||||||||||||| || || ||
Sbjct 55825 TGATTTTTGCGTAGATCAAGGAACTCAAAAACATCCGCATGCCATGGCTCAAGGTAAACA 55766
Query 81358 GCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAAT 81414
|| | | || || | ||||| || | || || | |||||| ||| ||
Sbjct 55765 GCAAAGGCACCAGGACGCTTATTACCACCTTGATCAACATATCTGGCAGTGTTGTTGAAA 55706
Query 81415 ACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGAT--ACGCGACC 81472
|| || | |||||| | |||||| | || | ||||| ||||| | || | ||| |
Sbjct 55705 ACTCGGAGCATAGGAACGATACCGTTAGAGTTTCCGTTGGTACCGGCAATGTATGCG--C 55648
Query 81473 CCTTGGCGCGCACCTTGCTGATTGAA-AGACCGATGCCACCTGACCACTTTGAAATCTGA 81531
| | || || | | | ||| || ||||| || ||||| | |||||| ||| |
Sbjct 55647 CAGTAGCACGGAT-TCGGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATA 55589
Query 81532 GCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAG 81591
||||| |||| || || ||||| || || || || || | |||||||| | | |
Sbjct 55588 GCACAAATCTTCAAAGTATCGTAAATACCATCAATACTGTCCTCCTTCATGTCGATAAGG 55529
Query 81592 AAACAGCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGT 81649
|| || ||| | || | ||| | ||| || ||| ||| |||||||| | || |
Sbjct 55528 AAGCATGATGAAAGTTGTG--CTTGTGGAGTACCCGCAGAGAAGAGTGTTGGCGAGGCAT 55471
Query 81650 GAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCAC 81709
| |||| || ||||||||||| || || ||||| | | | | |||||| ||||
Sbjct 55470 GTGTGAAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCAATATCATCAC 55411
Query 81710 CGTGAATACCGATAGCTACACGCATAAACAT 81740
|||||||||| | || |||||||| | |||
Sbjct 55410 CGTGAATACCAACGGCAACACGCATGATCAT 55380
>seq17
Length=875485
Score = 131 bits (144), Expect = 2e-25
Identities = 138/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| |||||||| ||||| |||||||| || || |||||||| ||||| || | |||
Sbjct 658064 CTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCAT 658123
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
| ||| | ||| | || || ||||||||||||||||||||||| || || || ||| |
Sbjct 658124 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCCGATCAACAACGTTT 658183
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
|| || ||||| |||||| | || || | ||||| || |||| || || |||||||
Sbjct 658184 GATCTTCGCTGGAAAGCAATTGGAAGACGGACGTACTCTCTCAGATTACAACATCCAAAA 658243
Query 27594 GG 27595
||
Sbjct 658244 GG 658245
>seq35
Length=307329
Score = 125 bits (138), Expect = 8e-24
Identities = 305/456 (67%), Gaps = 6/456 (1%)
Strand=Plus/Plus
Query 64708 TTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTC 64767
|||| ||| ||||| | || || || || ||||| || ||||| || || || |||
Sbjct 74109 TTTGCTCAACGTCTTGTCGCATTCGCTGCCGTTGAAGGCATCTTCTTCTCCGGATCCTTC 74168
Query 64768 TGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAG 64827
||||| |||||||| || ||||| || || ||| | || || | || || |||||
Sbjct 74169 GCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTTATGGCCGGACTCACCTTCTCCAACGAA 74228
Query 64828 CTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTC 64887
|| ||||| || ||||| || |||||| || || || ||| ||| ||| |||
Sbjct 74229 CTCATCTCCCGTGACGAAGGTCTCCACACCGATTTCGCATGCCTCCTCTTCTCCCATCTC 74288
Query 64888 AAGGACAAACCATCACATGGGA-CTATAATTGATATAGTAAAATCGGCTGTAGAAATTGA 64946
||| || ||||| || | | | | || | | | ||| || | ||||||
Sbjct 74289 AAGCACCGCCCATC-CAAGCAAGCCGTCCAAGACGTTATCACCGAGGCCGTCGCAATTGA 74347
Query 64947 AAAGGAATTCATTACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGAT 65006
| |||||| | || | || ||||| ||| ||| | |||||| | || ||
Sbjct 74348 GCAAGAATTCTTGACCGAGGCTCTTCCTTGTGCTCTTTTGGGCATGAACTCCACCCTCAT 74407
Query 65007 GAAACAGTATATCGAATTTGTAGCAGATCGCCTGCTTACTCAGTTTGGTATTAAGCCCTA 65066
||| || || |||||||| || || ||||| || || | || ||||| | | | | |
Sbjct 74408 GAAGCAATACATCGAATTCGTTGCTGATCGTCTCCTCA-TCGCTTTGGG-TAACGACAAA 74465
Query 65067 --CTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACT 65124
|| || ||| | || |||||||||| ||||||| || | ||| || ||||||
Sbjct 74466 GTCTACAAGTCTGCCAACCCATTTGACTTCATGGAGAACATTTCCTTGGCCGGCAAGACT 74525
Query 65125 AACTTTTTTGAAAAGAGGGTAGGTGATTACTCAAAG 65160
||||| || |||||||| || ||||||||| ||||
Sbjct 74526 AACTTCTTCGAAAAGAGAGTTGGTGATTACCAAAAG 74561
>seq31
Length=409871
Score = 104 bits (114), Expect = 3e-17
Identities = 186/269 (69%), Gaps = 6/269 (2%)
Strand=Plus/Plus
Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043
||||| ||||| ||| |||| | || || || || || ||| ||||| ||||| |
Sbjct 225415 GACGGTCTCAAACCTGGACAGAGGAAAGTTATGTATGCTTGCTTCAAGCGCAACCTCACA 225474
Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAA---CGGCCTATCAC 32100
| ||| |||||||| | |||| | || || || ||| ||| |||||||||||
Sbjct 225475 AATGATATGAAGGTTGTTGAGCTTGCTGGTTATGT--CAGT-CAAGTCTCGGCCTATCAC 225531
Query 32101 CACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCA 32160
|| ||||| || || | ||| |||||||| ||| || || || ||||| ||| |
Sbjct 225532 CATGGCGAAGCTTCAATGCAGATGACCATTGTTGGCCTCGCACAAAATTTTGTTGGTTCG 225591
Query 32161 AATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAG 32220
|||||| | || | ||||||||| |||| | ||||| | | || || || |
Sbjct 225592 AATAACGTCAATTGTCTCGAGCCAAGTGGAAATTTTGGTAGTAGACTTCAGGGAGGAAGC 225651
Query 32221 GATGCTGCGAGCTCCCGTTACATCTTCAC 32249
|||||||| ||| ||||||| || || ||
Sbjct 225652 GATGCTGCTAGCGCCCGTTATATTTTTAC 225680
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570307363097120
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