Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq18 120 2e-22 seq3 105 4e-18 seq17 84.2 1e-11 >seq18 Length=865119 Score = 120 bits (132), Expect = 2e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| |||||||| || |||||| ||||||||| ||||| ||||| ||||| || || Sbjct 543464 AGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGG 543405 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||| || ||||| || || || ||||||||||| || || | ||||||| Sbjct 543404 CCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCC 543345 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 543344 TTGTCCTGGATCTT 543331 >seq3 Length=2676204 Score = 105 bits (116), Expect = 4e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||| || | ||||| ||||||||||| || ||||| ||| Sbjct 1949551 CCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAA 1949610 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| |||| || | ||| || || ||||| || || || ||||| || || || Sbjct 1949611 AGGGTTCTGCCGTCCTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGA 1949670 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTA-ACGATAAAATTGTGTCT-TCGCTCTCCA 34657 | ||||||||||| |||||| ||||| | || ||| || ||| || | |||| Sbjct 1949671 ATGCCCTCCTTGTCCTGAATCTTTGATTTTACATTAT-CAATGGTATCTGACGAT-TCCA 1949728 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || || || || || || || || ||||| || ||||| Sbjct 1949729 CCTCTAATGTAATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1949777 Score = 104 bits (114), Expect = 1e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| | ||| |||||||||||||| ||||| |||||||| || Sbjct 1949788 AGACGAAGGACCAAATGTAAAGTCGATTCCTTTTGAATGTTGTAATCCGAAAGTGTACGA 1949847 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || |||||||| ||||| ||||| || | ||| ||||| || || || | |||||| Sbjct 1949848 CCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGTGGGATACCCTCC 1949907 Query 34609 TTGTCTGTGATCTTT 34623 || ||| ||||||| Sbjct 1949908 TTATCTTGGATCTTT 1949922 Score = 93.3 bits (102), Expect = 3e-14 Identities = 98/127 (77%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTCGCTCGTCTT 34555 ||||| |||||||| ||| || || ||||| || || | || ||| || | |||| Sbjct 1950308 ACCAAGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCACTCAAGGTG--CGACCATCTT 1950365 Query 34556 CAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTG 34615 |||||||||| ||||| || || |||||||||||||| || || | |||||||||||| Sbjct 1950366 CAAGTTGTTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGAGGAATTCCCTCCTTGTCCT 1950425 Query 34616 TGATCTT 34622 |||||| Sbjct 1950426 GGATCTT 1950432 >seq17 Length=875485 Score = 84.2 bits (92), Expect = 1e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576 ||||||| ||||| |||||||| || || || ||||||| | ||| || || || || | Sbjct 658245 CCTTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAGA 658186 Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 | ||||| ||||| || || || | |||||||||||| |||||| Sbjct 658185 TCAAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTT 658140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727965963258