Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq3 143 2e-29
seq18 132 4e-26
seq17 102 7e-17
>seq3
Length=2676204
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || ||| |||| |||||| | ||||| | || |||||| ||||
Sbjct 1949777 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATTACATTAGAGGTGGAATCGTCA 1949718
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || ||| ||| ||||| ||||| || ||||| ||||| ||||||
Sbjct 1949717 GATACCATTGATAATGTAAAATCAAAGATTCAGGACAAGGAGGGCATTCCACCTGATCAA 1949658
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| || || || | || || || |||||||| ||| | ||| |||| ||||||||
Sbjct 1949657 CAACGATTGATCTTTGCAGGAAAGCAATTGGAGGACGGCAGAACCCTTTCGGATTACAAT 1949598
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||||||||||| ||||| || ||||| | ||| | || |||||
Sbjct 1949597 ATTCAAAAGGAAAGCACCTTGCACTTGGTGCTCCGTCTTCGTGGTGG 1949551
Score = 132 bits (146), Expect = 4e-26
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 26994 ATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCG 27053
||| | || || ||||| ||||| ||| | || || ||||| || ||| | || ||| |
Sbjct 1950227 ATAGTCGTTAAGACTCTTACCGGAAAGACCATCACCCTTGAGGTCGAATCTTCAGACACC 1950168
Query 27054 ATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGT 27113
|| || | || || || ||||||||||| |||||||| || ||||| ||||| |||
Sbjct 1950167 ATCGACAACGTTAAGTCTAAGATTCAAGACAAGGAAGGCATTCCTCCCGACCAACAACGT 1950108
Query 27114 TTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAA 27173
|| || | ||| || || ||| |||||||| || ||| |||||||||| || || ||
Sbjct 1950107 TTGATTTTCGCTGGAAAGCAACTGGAAGACGGTCGCACCCTTTCCGATTATAATATCCAG 1950048
Query 27174 AAGGAGTCGACCTTACATTTGGT 27196
|||||||| ||| | || |||||
Sbjct 1950047 AAGGAGTCTACCCTTCACTTGGT 1950025
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || || ||||| ||| | || ||| | || || ||| | ||
Sbjct 1950005 ATGCAGATCTTCGTCAAGACCCTTACCGGAAAGACAATCACTTTGGAGGTTGAATCATCG 1949946
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || || ||| || ||||| || || || || ||||||||||||
Sbjct 1949945 GATACCATCGACAATGTGAAGTCAAAGATCCAAGATAAGGAGGGTATCCCACCCGATCAA 1949886
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| ||| | || | || || || ||| | || || || || |||| |||||||||
Sbjct 1949885 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGTCGTACACTTTCGGATTACAAC 1949826
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||||||||| ||||| ||||||||||| | ||| | || ||||| ||
Sbjct 1949825 ATTCAAAAGGAATCGACTTTACATTTGGTCCTTCGTCTCCGTGGTGGTAT 1949776
Score = 89.7 bits (98), Expect = 4e-13
Identities = 132/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069
||||||| ||| ||||||| || || || || | |||| | || || | |||||
Sbjct 1950494 TGACCGGTAAGACTATTACCCTCGAGGTTGAGTCCAGCGACACCATCGACAATGTCAAGT 1950435
Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129
|| || || ||||| || || || || ||||| ||||||||||| || | |||||| |
Sbjct 1950434 CCAAGATCCAGGACAAGGAGGGAATTCCTCCCGACCAACAGCGTTTGATTTTCGCCGGAA 1950375
Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189
||||| | ||||| || ||| | || |||||||| || || ||||| || | |
Sbjct 1950374 AACAACTTGAAGATGGTCGCACCTTGAGTGACTACAACATCCAGAAAGAGTCTACTCTCC 1950315
Query 27190 ATTTGGT 27196
| |||||
Sbjct 1950314 ACTTGGT 1950308
>seq18
Length=865119
Score = 132 bits (146), Expect = 4e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || || || || ||||| | || || || || || || | ||
Sbjct 543246 CATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTC 543305
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|||| | || || | ||||| || || || ||||| || || || |||||||| ||
Sbjct 543306 CGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCCGACCA 543365
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||| || || | |||||| || ||| | ||||| | ||| |||||||||||||
Sbjct 543366 ACAGCGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTTTCCGATTACAA 543425
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||| ||||||||||| || | || ||||| || ||| | || |||||
Sbjct 543426 CATCCAAAAGGAGTCCACTCTTCACTTGGTGTTACGTCTCCGTGGTGG 543473
>seq17
Length=875485
Score = 102 bits (112), Expect = 7e-17
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056
|| || || || || || |||||| | || || ||||| || || | |||||| | ||
Sbjct 658065 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATC 658124
Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116
|| | ||||| || || || ||||| || || || || ||||||||||| |||||
Sbjct 658125 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCCGATCAACAACGTTTG 658184
Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176
|| | ||| || || |||||||||||| | || | || ||||||||||| ||||||
Sbjct 658185 ATCTTCGCTGGAAAGCAATTGGAAGACGGACGTACTCTCTCAGATTACAACATCCAAAAG 658244
Query 27177 G 27177
|
Sbjct 658245 G 658245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434916084059520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |