Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq18 188 2e-42 seq3 185 2e-41 seq17 147 5e-30 seq38 98.7 2e-15 >seq18 Length=865119 Score = 188 bits (208), Expect = 2e-42 Identities = 175/222 (79%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || | || || | ||||||||||||||| ||||||||||| ||||| | |||||| Sbjct 543468 ACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAAAGGGT 543409 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || ||||| || |||||||| | || |||||||| || |||| ||| Sbjct 543408 GCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCC 543349 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || || || ||||||||||| || ||||||||||| Sbjct 543348 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAG 543289 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || |||||||| ||||| || || | |||||| Sbjct 543288 GGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 543247 >seq3 Length=2676204 Score = 185 bits (204), Expect = 2e-41 Identities = 167/210 (80%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| ||||| | |||||| || ||||| || ||||| |||||||| | |||||| Sbjct 1950012 ACGAAGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATATTATAATCGGAAAGGGT 1950071 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || |||||||| ||||| || ||||| || | ||||||||||| ||||||| || Sbjct 1950072 GCGACCGTCTTCCAGTTGCTTTCCAGCGAAAATCAAACGTTGTTGGTCGGGAGGAATGCC 1950131 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || ||||| || ||||| ||||||||||| || ||| ||||| || Sbjct 1950132 TTCCTTGTCTTGAATCTTAGACTTAACGTTGTCGATGGTGTCTGAAGATTCGACCTCAAG 1950191 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 ||||| |||||||| || |||||||| || Sbjct 1950192 GGTGATGGTCTTTCCGGTAAGAGTCTTAAC 1950221 Score = 149 bits (164), Expect = 1e-30 Identities = 154/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 ||||||||| ||||| | ||| ||||| |||||||| |||||||| || || | ||||| Sbjct 1950295 ACGAAGTCTGAGGACCAAGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCACTCAAGG- 1950353 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | |||||||| || || || || ||||| || | || |||||||| ||||||| || Sbjct 1950354 TGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGAGGAATTC 1950413 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 | ||||||||||||||||| || || || ||||||||||| | |||||||||| Sbjct 1950414 CCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCAACCTCGA 1950473 Query 211072 GAGTGATCGTCTTTCCCGT 211090 | || || ||||| || || Sbjct 1950474 GGGTAATAGTCTTACCGGT 1950492 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| | ||| || ||||| || || ||||||| |||||| Sbjct 1949556 ACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAAAGGGT 1949615 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 || || || |||| ||||| ||||| ||||| | |||||||| ||||| |||| || Sbjct 1949616 TCTGCCGTCCTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCC 1949675 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| |||||| ||| || || || ||||| || || ||| ||||| | Sbjct 1949676 CTCCTTGTCCTGAATCTTTGATTTTACATTATCAATGGTATCTGACGATTCCACCTCTAA 1949735 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || | |||||| ||||| | ||||| Sbjct 1949736 TGTAATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1949777 >seq17 Length=875485 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||||||||| ||||| | || || | ||| ||||||| ||||| || |||||||| Sbjct 658243 TTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAGATC 658184 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | |||||||| || ||||||| ||| ||||||||||||||||| || || || ||| Sbjct 658183 AAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 658124 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| ||| || ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 658123 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 658065 >seq38 Length=269250 Score = 98.7 bits (108), Expect = 2e-15 Identities = 189/275 (69%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152 |||||||||||||||||| || ||||| ||||| |||||||| |||| Sbjct 56129 GTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAAGGGATTTCCGGT 56070 Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212 ||| | ||||||| | |||||| | |||||| | || || || |||||| | Sbjct 56069 CTCGGTTTGAGCCTCAAGAATGGAGTACCAAAGTTTTTGAGCCTTGATAGTCTTGCGACC 56010 Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272 || ||| | || ||||| | |||||| ||||||| ||| ||||| ||||| | Sbjct 56009 CTTGCCTGCCTTTTCGTAACCCTCGTAGAGAGCCTCGAACTCCTCGCCATAAACATCTGC 55950 Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACC-GTCTTCCTTC-ACTCGT 178330 | ||| ||| || |||||||| | |||| |||| | || |||| ||| || || Sbjct 55949 TAAACCTGGACATTCGTTGGGGCACATGAGAGTCCAATCCCCATTCTT--TTCAACACGC 55892 Query 178331 TTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 |||||||| || |||| |||| | ||| ||||| Sbjct 55891 TTCATGAATAGATCAGGAATCCACAAGGCGTAGAA 55857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159145673203490