Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq18 122 6e-23
seq3 109 4e-19
seq17 87.8 1e-12
>seq18
Length=865119
Score = 122 bits (134), Expect = 6e-23
Identities = 157/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||||||||| ||||| ||||| ||||| ||||| || |
Sbjct 543247 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCC 543306
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | | ||||| || || | || || || ||
Sbjct 543307 GACACCATCGACAATGTCAAGTCCAAGA-TCCAGGACAAGGAGGGAATTCCACCCGACCA 543365
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| || || || ||||| || ||||| ||||| | ||||| | |||||||||
Sbjct 543366 ACAGCGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTTTCCGATTACAA 543425
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823
||| ||||| |||||||| | || || || |||
Sbjct 543426 CATCCAAAAGGAGTCCACTCTTCACTTGGTGTTA 543459
>seq3
Length=2676204
Score = 109 bits (120), Expect = 4e-19
Identities = 154/212 (73%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||| || ||||| || |||||| | || ||||| || ||
Sbjct 1950005 ATGCAGATCTTCGTCAAGACCCTTACCGGAAAGACAATCACTTTGGAGGTTGAATCATCG 1949946
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | || ||| | || |||| | | || || || ||| | || || |||||
Sbjct 1949945 GATACCATCGACAATGTGAAGTCAAAGA-TCCAAGATAAGGAGGGTATCCCACCCGATCA 1949887
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787
||| ||| | || ||||| || || ||||| || || | || |||||| || |||||
Sbjct 1949886 ACAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGTCGTACACTTTCGG--ATTAC 1949829
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819
||||| ||||| || || || |||||||| ||
Sbjct 1949828 AACATTCAAAAGGAATCGACTTTACATTTGGT 1949797
Score = 86.0 bits (94), Expect = 4e-12
Identities = 125/174 (72%), Gaps = 2/174 (1%)
Strand=Plus/Minus
Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACA 23693
|| || || || || || ||||| ||||| |||| ||||| | || ||| | || |
Sbjct 1950492 ACCGGTAAGACTATTACCCTCGAGGTTGAGTCCAGCGACACCATCGACAATGTCAAGTCC 1950433
Query 23694 AAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAA 23753
|| | | ||||| || || | || || || ||||||||||| || || ||||| ||
Sbjct 1950432 AAGA-TCCAGGACAAGGAGGGAATTCCTCCCGACCAACAGCGTTTGATTTTCGCCGGAAA 1950374
Query 23754 ACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807
|||||| ||||| | ||||| || | || |||||||| || |||||||| ||
Sbjct 1950373 ACAACTTGAAGATGGTCGCACCTTGAGTGACTACAACATCCAGAAAGAGTCTAC 1950320
Score = 84.2 bits (92), Expect = 1e-11
Identities = 133/188 (71%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 23621 TCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTG 23680
||||||| || || || ||||| || ||||| || || || || || | ||||| | |
Sbjct 1950223 TCGTTAAGACTCTTACCGGAAAGACCATCACCCTTGAGGTCGAATCTTCAGACACCATCG 1950164
Query 23681 A-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTA 23739
| || |||| | || | || ||||| ||||| | || || || ||||| |||||
Sbjct 1950163 ACAACGTTAAGTCTAAGA-TTCAAGACAAGGAAGGCATTCCTCCCGACCAACAACGTTTG 1950105
Query 23740 ATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAA 23799
|| || || || || ||||||||||||| ||||| | |||||| || || || ||
Sbjct 1950104 ATTTTCGCTGGAAAGCAACTGGAAGACGGTCGCACCCTTTCCGATTATAATATCCAGAAG 1950045
Query 23800 GAGTCCAC 23807
||||| ||
Sbjct 1950044 GAGTCTAC 1950037
>seq17
Length=875485
Score = 87.8 bits (96), Expect = 1e-12
Identities = 129/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679
||||| || ||||| ||||| || || ||||| || || || || ||| | ||||| |
Sbjct 658065 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATC 658124
Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738
|| ||| | || | || | | ||||| || || | || || |||||||| |||||
Sbjct 658125 GACAATGTCAAGTCCAAGA-TCCAGGACAAGGAGGGAATTCCTCCCGATCAACAACGTTT 658183
Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798
|| || || || || ||| ||||||||| ||| ||| | ||||||||||| |||||
Sbjct 658184 GATCTTCGCTGGAAAGCAATTGGAAGACGGACGTACTCTCTCAGATTACAACATCCAAAA 658243
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338007845096408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |