Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq3 149 1e-30
seq18 143 6e-29
seq17 125 2e-23
seq7 86.0 1e-11
>seq3
Length=2676204
Score = 149 bits (164), Expect = 1e-30
Identities = 157/207 (76%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||||||||| ||||| | ||| || || || || || |||| ||| ||||||| | ||
Sbjct 1950012 ACGAAGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATATTATAATCGGAAAGGGT 1950071
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || ||||| || ||||| |||||||| || | |||||||||||||| ||||| ||
Sbjct 1950072 GCGACCGTCTTCCAGTTGCTTTCCAGCGAAAATCAAACGTTGTTGGTCGGGAGGAATGCC 1950131
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||||||| ||||| ||| || |||||||||||||| | ||| || || |
Sbjct 1950132 TTCCTTGTCTTGAATCTTAGACTTAACGTTGTCGATGGTGTCTGAAGATTCGACCTCAAG 1950191
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||| ||||| || || | ||| ||
Sbjct 1950192 GGTGATGGTCTTTCCGGTAAGAGTCTT 1950218
Score = 140 bits (154), Expect = 8e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | || | ||| ||||| ||||| | |||||||| | | || | |||||
Sbjct 1949794 AGGACCAAATGTAAAGTCGATTCCTTTTGAATGTTGTAATCCGAAAGTGTACGACCATCC 1949853
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| ||||| |||||||| |||||||| ||||| || ||||| ||||| |||
Sbjct 1949854 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGTGGGATACCCTCCTTATCT 1949913
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
||||||||| ||||||| |||||||| || || | ||| || || || ||||| |||
Sbjct 1949914 TGGATCTTTGACTTCACATTGTCGATGGTATCCGATGATTCAACCTCCAAAGTGATTGTC 1949973
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || | || || | ||| | |||||
Sbjct 1949974 TTTCCGGTAAGGGTCTTGACGAAGATCTGCAT 1950005
Score = 131 bits (144), Expect = 4e-25
Identities = 149/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||||||||| ||||| | ||||||||| || ||||| |||| ||||| || ||| ||
Sbjct 1950295 ACGAAGTCTGAGGACCAAGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCACTCAAGGT 1950354
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| || || || || ||||| || | || ||||||||||| ||||| ||
Sbjct 1950355 GCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGAGGAATTCC 1950414
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| ||| ||||||||||| || || || || |
Sbjct 1950415 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCAACCTCGAG 1950474
Query 225672 CGTGATCGTCTTGCCCGTCA 225691
|| || ||||| || ||||
Sbjct 1950475 GGTAATAGTCTTACCGGTCA 1950494
>seq18
Length=865119
Score = 143 bits (158), Expect = 6e-29
Identities = 154/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569
||| |||||||| || ||||||| |||||||||| | || | |||||||| || ||
Sbjct 543450 GTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGGCCATCTTCGAGTTG 543391
Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629
||| || |||||||| | ||| ||||||||||| ||||| || |||||||| ||||||||
Sbjct 543390 CTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTTGTCCTGGATCTT 543331
Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
||| ||| ||||||||||| || | || || || | ||||| || ||||||||
Sbjct 543330 GGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTTTTGCCCGT 543271
Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713
| || || | ||| | |||||
Sbjct 543270 GAGGGTCTTGACGAAGATCTGCAT 543247
>seq17
Length=875485
Score = 125 bits (138), Expect = 2e-23
Identities = 126/164 (77%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
||||||| |||||||| | | ||| | || ||||| | ||||| |||||||||||
Sbjct 658243 TTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAGATC 658184
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| |||||||| ||||| ||||| || |||||||| |||||||| ||| ||| |||
Sbjct 658183 AAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 658124
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|||||||| |||| || || || | ||||| |||||||||||
Sbjct 658123 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 658080
>seq7
Length=2029552
Score = 86.0 bits (94), Expect = 1e-11
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| ||||| |||||||||||||| || || || || |||||||||||||| ||||||||
Sbjct 1428816 GAAAATTTGTCCATCAGTAATAGAAATGACGTTAGTTGGGATATAAGCAGACACATCACC 1428875
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574
|||| || || | | || | ||| || | |||||||||||
Sbjct 1428876 ACCTTGAGTCTCAATGATGGGGAGGGCAGTCAAGGATCCACCACC 1428920
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192524691015644
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |