Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq18 140 7e-28
seq3 98.7 2e-15
>seq18
Length=865119
Score = 140 bits (154), Expect = 7e-28
Identities = 159/210 (76%), Gaps = 5/210 (2%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| |||||||| ||||| ||||||||||||||||||| | || | |||||||| |
Sbjct 543453 CAAG-TGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGGCCATCTTCGA 543395
Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
| ||||| ||||||||||| | | ||| ||||| | | ||||| ||||| || ||
Sbjct 543394 GTTGCTTT--CCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTTGTCCTG 543337
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074
|| || |||||| | || | | |||| ||| ||| || || || || || |||||
Sbjct 543336 GATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTTTT 543277
Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||||||| ||||| ||||||| ||||||
Sbjct 543276 GCCCGTGAGGGTCTTGACGAAGATCTGCAT 543247
>seq3
Length=2676204
Score = 98.7 bits (108), Expect = 2e-15
Identities = 149/210 (71%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||||||||| | ||||| |||||||| || ||||| || ||||||| | || |
Sbjct 1950016 AGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATATTATAATCGGAAAGGGTGCGA 1950075
Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004
|| ||||| || ||||| || ||||| || | | || ||||| | | || ||||
Sbjct 1950076 CCGTCTTCCAGTTGCTTT--CCAGCGAAAATCAAACGTTGTTGGTCGGGAGGAATGCCTT 1950133
Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064
|||| |||||||| || || || | || | | |||||||| || || ||||| |
Sbjct 1950134 CCTTGTCTTGAATCTTAGACTTAACGTTGTCGATGGTGTCTGAAGATTCGACCTCAAGGG 1950193
Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094
| || || || || || |||||||| ||||
Sbjct 1950194 TGATGGTCTTTCCGGTAAGAGTCTTAACGA 1950223
Score = 96.9 bits (106), Expect = 8e-15
Identities = 140/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||||||||| | || |||||||||||||| ||||||||||| || || || |
Sbjct 1950299 AGTCTGAGGACCAAGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCACTCAAGGTGCGA 1950358
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|||||||| || ||| |||||||| || | | ||| ||||| | | ||||| |||
Sbjct 1950359 CCATCTTCAAGTTGTTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGAGGAATTCCCTCC 1950418
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAG 152064
|| || || || || |||||| | || | | ||| ||| | ||| || || || |
Sbjct 1950419 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGA--CTCAACCTCGAGGG 1950476
Query 152065 TAATAGTTTTGCCCGT 152080
||||||| || || ||
Sbjct 1950477 TAATAGTCTTACCGGT 1950492
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153814502301846
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |