Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq18 140 7e-28 seq3 98.7 2e-15 >seq18 Length=865119 Score = 140 bits (154), Expect = 7e-28 Identities = 159/210 (76%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| ||||| ||||||||||||||||||| | || | |||||||| | Sbjct 543453 CAAG-TGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGGCCATCTTCGA 543395 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||||||||| | | ||| ||||| | | ||||| ||||| || || Sbjct 543394 GTTGCTTT--CCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTTGTCCTG 543337 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || |||||| | || | | |||| ||| ||| || || || || || ||||| Sbjct 543336 GATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTTTT 543277 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||| ||||| ||||||| |||||| Sbjct 543276 GCCCGTGAGGGTCTTGACGAAGATCTGCAT 543247 >seq3 Length=2676204 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||||||||| | ||||| |||||||| || ||||| || ||||||| | || | Sbjct 1950016 AGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATATTATAATCGGAAAGGGTGCGA 1950075 Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 || ||||| || ||||| || ||||| || | | || ||||| | | || |||| Sbjct 1950076 CCGTCTTCCAGTTGCTTT--CCAGCGAAAATCAAACGTTGTTGGTCGGGAGGAATGCCTT 1950133 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| |||||||| || || || | || | | |||||||| || || ||||| | Sbjct 1950134 CCTTGTCTTGAATCTTAGACTTAACGTTGTCGATGGTGTCTGAAGATTCGACCTCAAGGG 1950193 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | || || || || || |||||||| |||| Sbjct 1950194 TGATGGTCTTTCCGGTAAGAGTCTTAACGA 1950223 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||||||||| | || |||||||||||||| ||||||||||| || || || | Sbjct 1950299 AGTCTGAGGACCAAGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCACTCAAGGTGCGA 1950358 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| |||||||| || | | ||| ||||| | | ||||| ||| Sbjct 1950359 CCATCTTCAAGTTGTTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGAGGAATTCCCTCC 1950418 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAG 152064 || || || || || |||||| | || | | ||| ||| | ||| || || || | Sbjct 1950419 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGA--CTCAACCTCGAGGG 1950476 Query 152065 TAATAGTTTTGCCCGT 152080 ||||||| || || || Sbjct 1950477 TAATAGTCTTACCGGT 1950492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153814502301846