Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3 181 2e-40 seq18 172 1e-37 seq17 129 1e-24 seq35 111 3e-19 seq6 91.5 3e-13 seq23 84.2 5e-11 >seq3 Length=2676204 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| |||||| || ||| ||||| |||||||| || | Sbjct 1949778 ACCACCACGGAGACGAAGGACCAAATGTAAAGTCGATTCCTTTTGAATGTTGTAATCCGA 1949837 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || |||||||| ||||| || || |||||||| | ||||||||| || || Sbjct 1949838 AAGTGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGTGG 1949897 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| ||||||||||||| || || | ||||| || ||||| | ||| || Sbjct 1949898 GATACCCTCCTTATCTTGGATCTTTGACTTCACATTGTCGATGGTATCCGATGATTCAAC 1949957 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| ||||| || || | ||||| ||||| |||||||| Sbjct 1949958 CTCCAAAGTGATTGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCAT 1950005 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || || |||||||| ||||| || ||||| || | Sbjct 1949550 ACCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGA 1949609 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | ||| ||||| | ||| || || ||||||||||| |||||||| ||| || Sbjct 1949610 AAGGGTTCTGCCGTCCTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGG 1949669 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||||| |||||| |||| || || || || | ||| || Sbjct 1949670 AATGCCCTCCTTGTCCTGAATCTTTGATTTTACATTATCAATGGTATCTGACGATTCCAC 1949729 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || ||||| || ||||||||||| || || || ||||| Sbjct 1949730 CTCTAATGTAATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1949777 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || | || |||| || | || || || ||||| || || || | Sbjct 1950006 ACCACCACGAAGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATATTATAATCGGA 1950065 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| || || || ||||| || || || || ||||||||||||||||| || Sbjct 1950066 AAGGGTGCGACCGTCTTCCAGTTGCTTTCCAGCGAAAATCAAACGTTGTTGGTCGGGAGG 1950125 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||||||||| ||||| | || ||| | ||||| ||||| |||| |||||| Sbjct 1950126 AATGCCTTCCTTGTCTTGAATCTTAGACTTAACGTTGTCGATGGTGTCTGAAGATTCGAC 1950185 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATAT 283093 || || ||||| ||||| || || | ||||||||||| ||| Sbjct 1950186 CTCAAGGGTGATGGTCTTTCCGGTAAGAGTCTTAACGACTAT 1950227 Score = 136 bits (150), Expect = 8e-27 Identities = 156/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCA-G 282930 ||||||||| || | || |||| || | || ||||| ||||||||||||||| Sbjct 1950289 ACCACCACGAAGTCTGAGGACCAAGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCACT 1950348 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| ||||| ||||| || |||||||| ||||| || |||||||| |||||||| | Sbjct 1950349 CAAG-GTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGAG 1950407 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| ||||||||||| |||||||| | || || | ||||| ||||| | || | Sbjct 1950408 GAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCAA 1950467 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCA 283077 | ||||| || || |||||||| |||| Sbjct 1950468 CCTCGAGGGTAATAGTCTTACCGGTCA 1950494 >seq18 Length=865119 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||| || | ||| || |||||||||||||| || | Sbjct 543474 ACCACCACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGA 543415 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||||||||| || ||||| || ||||| |||||||| || |||||||| || Sbjct 543414 AAGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGG 543355 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || || | ||||| ||||| |||| || || Sbjct 543354 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAAC 543295 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| || || ||||| | ||||| ||||| |||||||| Sbjct 543294 CTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 543247 >seq17 Length=875485 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 |||||||||||||| || | || || || || || || | ||| || || || |||||| Sbjct 658243 TTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAGATC 658184 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 ||||||||||| || ||||| ||||||||||| |||||||| | || || | ||| Sbjct 658183 AAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 658124 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || | ||||| || || ||||| ||||| ||||| | ||||| ||||| Sbjct 658123 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 658065 >seq35 Length=307329 Score = 111 bits (122), Expect = 3e-19 Identities = 171/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 230167 TCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTA 230226 |||| || | || |||| ||| | || ||| | ||| ||| ||||||| |||| Sbjct 74326 TCACCGAGGCCGTCGCAATTGAGCAAGAATTCTTGACCGAGGCTCTTCCTTGTGCTCTTT 74385 Query 230227 TCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCG 230286 | |||||||| | |||||| |||||| ||||||||||| ||||||||| | || Sbjct 74386 TGGGCATGAACTCCACCCTCATGAAGCAATACATCGAATTCGTTGCTGATCGTCTCCTCA 74445 Query 230287 TGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCA 230346 | || | || |||| ||||| || || || ||||| || | || |||||| || Sbjct 74446 TCGCTTTGGGTAACGACAAAGTCTACAAGTCTGCCAACCCATTTGACTTCATGGAGAACA 74505 Query 230347 TTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCG 230406 |||| | || || |||||||||||||||||| | || | ||||| |||| | | | Sbjct 74506 TTTCCTTGGCCGGCAAGACTAACTTCTTCGAAAAGAGAGTTGGTGATTACCAAAAGGCTG 74565 Query 230407 GTGT 230410 |||| Sbjct 74566 GTGT 74569 >seq6 Length=2097206 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 316983 GTCGAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAA 317042 |||||| || |||||||| | |||| || | | |||| | ||||| || || | Sbjct 1555690 GTCGAGATCGTGCTCAACGAACACAGTCTTGACCTCACTCTTCTTGGGGAAACCCTCGAC 1555749 Query 317043 CTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAG 317102 || |||| ||| || | ||| || || ||||| || | ||| || || ||||| || Sbjct 1555750 TTGCTCGTTGTTAATAGCACGCATGAGAGTAGACTTTCCGGAACCGTTAGGACCGCAGAG 1555809 Query 317103 ACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACC 317162 |||||| || | || ||| ||| | | |||||||||| ||||||||||| |||| Sbjct 1555810 ACCATATCGTTGACCACGCTTGAGACGGAGATGGGTGTTGTTAAGAAGAATCTTGGCACC 1555869 Query 317163 ATATGCCA 317170 |||||||| Sbjct 1555870 ATATGCCA 1555877 >seq23 Length=647751 Score = 84.2 bits (92), Expect = 5e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 316168 TCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATCC 316227 || |||||| |||||||||||||||| |||||||||||| ||| | || | ||| | Sbjct 351873 TCATCACCGTTGGCATAACGCCATTGGAGGTACTGATTGGGGGTCTTTTCCAAATGCATC 351814 Query 316228 TCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAA 316287 || | ||| | ||||| ||||| | || ||| ||||| || |||||||| | Sbjct 351813 TCAACGTGCTCCAAAGCATGCTGCTTGATATATCCAATACGCAAGTTAGGATGCTTATAG 351754 Query 316288 ACGCTACCGTTAGTAG 316303 ||| ||||| |||||| Sbjct 351753 ACGTTACCGGTAGTAG 351738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046733486766604