Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq3 181 2e-40
seq18 172 1e-37
seq17 129 1e-24
seq35 111 3e-19
seq6 91.5 3e-13
seq23 84.2 5e-11
>seq3
Length=2676204
Score = 181 bits (200), Expect = 2e-40
Identities = 177/228 (78%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || ||||| |||| |||||| || ||| ||||| |||||||| || |
Sbjct 1949778 ACCACCACGGAGACGAAGGACCAAATGTAAAGTCGATTCCTTTTGAATGTTGTAATCCGA 1949837
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || || |||||||| ||||| || || |||||||| | ||||||||| || ||
Sbjct 1949838 AAGTGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGTGG 1949897
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||| ||||||||||||| || || | ||||| || ||||| | ||| ||
Sbjct 1949898 GATACCCTCCTTATCTTGGATCTTTGACTTCACATTGTCGATGGTATCCGATGATTCAAC 1949957
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | |||||| ||||| || || | ||||| ||||| ||||||||
Sbjct 1949958 CTCCAAAGTGATTGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCAT 1950005
Score = 172 bits (190), Expect = 1e-37
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || |||| || || |||||||| ||||| || ||||| || |
Sbjct 1949550 ACCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGA 1949609
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || | ||| ||||| | ||| || || ||||||||||| |||||||| ||| ||
Sbjct 1949610 AAGGGTTCTGCCGTCCTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGG 1949669
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| || ||||||| |||||| |||| || || || || | ||| ||
Sbjct 1949670 AATGCCCTCCTTGTCCTGAATCTTTGATTTTACATTATCAATGGTATCTGACGATTCCAC 1949729
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | || || ||||| || ||||||||||| || || || |||||
Sbjct 1949730 CTCTAATGTAATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1949777
Score = 149 bits (164), Expect = 1e-30
Identities = 166/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || | || |||| || | || || || ||||| || || || |
Sbjct 1950006 ACCACCACGAAGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATATTATAATCGGA 1950065
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| ||||| || || || ||||| || || || || ||||||||||||||||| ||
Sbjct 1950066 AAGGGTGCGACCGTCTTCCAGTTGCTTTCCAGCGAAAATCAAACGTTGTTGGTCGGGAGG 1950125
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || ||||||||||| ||||| | || ||| | ||||| ||||| |||| ||||||
Sbjct 1950126 AATGCCTTCCTTGTCTTGAATCTTAGACTTAACGTTGTCGATGGTGTCTGAAGATTCGAC 1950185
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATAT 283093
|| || ||||| ||||| || || | ||||||||||| |||
Sbjct 1950186 CTCAAGGGTGATGGTCTTTCCGGTAAGAGTCTTAACGACTAT 1950227
Score = 136 bits (150), Expect = 8e-27
Identities = 156/207 (75%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCA-G 282930
||||||||| || | || |||| || | || ||||| |||||||||||||||
Sbjct 1950289 ACCACCACGAAGTCTGAGGACCAAGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCACT 1950348
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
|||| ||||| ||||| || |||||||| ||||| || |||||||| |||||||| |
Sbjct 1950349 CAAG-GTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGAG 1950407
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|||| ||||||||||| |||||||| | || || | ||||| ||||| | || |
Sbjct 1950408 GAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCAA 1950467
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCA 283077
| ||||| || || |||||||| ||||
Sbjct 1950468 CCTCGAGGGTAATAGTCTTACCGGTCA 1950494
>seq18
Length=865119
Score = 172 bits (190), Expect = 1e-37
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || | |||| || | ||| || |||||||||||||| || |
Sbjct 543474 ACCACCACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGA 543415
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| ||||||||||| || ||||| || ||||| |||||||| || |||||||| ||
Sbjct 543414 AAGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGG 543355
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| | || || | ||||| ||||| |||| || ||
Sbjct 543354 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAAC 543295
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| || || ||||| | ||||| ||||| ||||||||
Sbjct 543294 CTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 543247
>seq17
Length=875485
Score = 129 bits (142), Expect = 1e-24
Identities = 136/179 (76%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|||||||||||||| || | || || || || || || | ||| || || || ||||||
Sbjct 658243 TTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAGATC 658184
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
||||||||||| || ||||| ||||||||||| |||||||| | || || | |||
Sbjct 658183 AAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 658124
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| ||||| || | ||||| || || ||||| ||||| ||||| | ||||| |||||
Sbjct 658123 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 658065
>seq35
Length=307329
Score = 111 bits (122), Expect = 3e-19
Identities = 171/244 (70%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 230167 TCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTA 230226
|||| || | || |||| ||| | || ||| | ||| ||| ||||||| ||||
Sbjct 74326 TCACCGAGGCCGTCGCAATTGAGCAAGAATTCTTGACCGAGGCTCTTCCTTGTGCTCTTT 74385
Query 230227 TCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCG 230286
| |||||||| | |||||| |||||| ||||||||||| ||||||||| | ||
Sbjct 74386 TGGGCATGAACTCCACCCTCATGAAGCAATACATCGAATTCGTTGCTGATCGTCTCCTCA 74445
Query 230287 TGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCA 230346
| || | || |||| ||||| || || || ||||| || | || |||||| ||
Sbjct 74446 TCGCTTTGGGTAACGACAAAGTCTACAAGTCTGCCAACCCATTTGACTTCATGGAGAACA 74505
Query 230347 TTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCG 230406
|||| | || || |||||||||||||||||| | || | ||||| |||| | | |
Sbjct 74506 TTTCCTTGGCCGGCAAGACTAACTTCTTCGAAAAGAGAGTTGGTGATTACCAAAAGGCTG 74565
Query 230407 GTGT 230410
||||
Sbjct 74566 GTGT 74569
>seq6
Length=2097206
Score = 91.5 bits (100), Expect = 3e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 316983 GTCGAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAA 317042
|||||| || |||||||| | |||| || | | |||| | ||||| || || |
Sbjct 1555690 GTCGAGATCGTGCTCAACGAACACAGTCTTGACCTCACTCTTCTTGGGGAAACCCTCGAC 1555749
Query 317043 CTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAG 317102
|| |||| ||| || | ||| || || ||||| || | ||| || || ||||| ||
Sbjct 1555750 TTGCTCGTTGTTAATAGCACGCATGAGAGTAGACTTTCCGGAACCGTTAGGACCGCAGAG 1555809
Query 317103 ACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACC 317162
|||||| || | || ||| ||| | | |||||||||| ||||||||||| ||||
Sbjct 1555810 ACCATATCGTTGACCACGCTTGAGACGGAGATGGGTGTTGTTAAGAAGAATCTTGGCACC 1555869
Query 317163 ATATGCCA 317170
||||||||
Sbjct 1555870 ATATGCCA 1555877
>seq23
Length=647751
Score = 84.2 bits (92), Expect = 5e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 316168 TCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATCC 316227
|| |||||| |||||||||||||||| |||||||||||| ||| | || | ||| |
Sbjct 351873 TCATCACCGTTGGCATAACGCCATTGGAGGTACTGATTGGGGGTCTTTTCCAAATGCATC 351814
Query 316228 TCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAA 316287
|| | ||| | ||||| ||||| | || ||| ||||| || |||||||| |
Sbjct 351813 TCAACGTGCTCCAAAGCATGCTGCTTGATATATCCAATACGCAAGTTAGGATGCTTATAG 351754
Query 316288 ACGCTACCGTTAGTAG 316303
||| ||||| ||||||
Sbjct 351753 ACGTTACCGGTAGTAG 351738
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046733486766604
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |