Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq18 145 5e-30 seq17 120 2e-22 seq3 111 1e-19 >seq18 Length=865119 Score = 145 bits (160), Expect = 5e-30 Identities = 163/216 (75%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185 ||||||| |||||| ||| ||||||||||||||||||||||| || ||| | || Sbjct 543458 AACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGGCCATCT 543399 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 || || ||||| ||||| |||||||| ||||| || || | || | || ||||| ||| Sbjct 543398 TCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTTGTCC 543339 Query 44246 GTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 ||||| ||| || ||| | |||||||||| || || ||||| | || || | Sbjct 543338 TGGATCTTGGACTTGACATTGT--CGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGG 543281 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 | || |||||||||||||| |||||||| ||||||| Sbjct 543280 TTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGA 543245 >seq17 Length=875485 Score = 120 bits (132), Expect = 2e-22 Identities = 138/184 (75%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 ||||||||||||||||||| | ||| || |||| |||| ||||| || || |||| Sbjct 658245 CCTTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAGA 658186 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||||||| || ||||| | ||| | || ||||| ||| ||||| ||| || ||| Sbjct 658185 TCAAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 658126 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||||| ||| || ||||| | || || ||||| ||||| |||||||| || Sbjct 658125 --CGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGAC 658068 Query 44326 GAAG 44329 |||| Sbjct 658067 GAAG 658064 >seq3 Length=2676204 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||| ||||||||||| | ||| || | || || || ||||| || |||||| Sbjct 1949815 TCCTTTTGAATGTTGTAATCCGAAAGTGTACGACCATCCTCAAGTTGCTTACCAGCAAAG 1949874 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | ||| || ||||| | || | ||| ||||| || ||||| ||||| | Sbjct 1949875 ATAAGACGTTGTTGATCGGGTGGGATACCCTCCTTATCTTGGATCTTTGACTTCACATTG 1949934 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | ||||| || | ||||| ||||||| || || |||||||| || |||||||| ||| Sbjct 1949935 TCGATGGTATCCGATGATTCAACCTCCAAAGTGATTGTCTTTCCGGTAAGGGTCTTGACG 1949994 Query 44327 AAGATTTGCAT 44337 ||||| ||||| Sbjct 1949995 AAGATCTGCAT 1950005 Score = 105 bits (116), Expect = 5e-18 Identities = 154/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCG 44185 ||||| ||| | ||||| |||||||| || |||||||| | || || || |||| Sbjct 1949568 CACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAAAG--GGTTCTGCCGTCC 1949625 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| ||||| || ||||||||||| || || ||||| | || | || ||||| ||| Sbjct 1949626 TCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCCTCCTTGTCC 1949685 Query 44246 GTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| || || | || | ||||| || | ||||||||||| | ||||| || Sbjct 1949686 TGAATCTT-TGATTTTACATTATCAATGGTATCTGACGATTCCACCTCTAATGTAATGGT 1949744 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | ||||| || ||||||||||| Sbjct 1949745 CTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1949777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988530974842