Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq18 145 5e-30
seq17 120 2e-22
seq3 111 1e-19
>seq18
Length=865119
Score = 145 bits (160), Expect = 5e-30
Identities = 163/216 (75%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185
||||||| |||||| ||| ||||||||||||||||||||||| || ||| | ||
Sbjct 543458 AACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGGCCATCT 543399
Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245
|| || ||||| ||||| |||||||| ||||| || || | || | || ||||| |||
Sbjct 543398 TCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTTGTCC 543339
Query 44246 GTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303
||||| ||| || ||| | |||||||||| || || ||||| | || || |
Sbjct 543338 TGGATCTTGGACTTGACATTGT--CGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGG 543281
Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339
| || |||||||||||||| |||||||| |||||||
Sbjct 543280 TTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGA 543245
>seq17
Length=875485
Score = 120 bits (132), Expect = 2e-22
Identities = 138/184 (75%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
||||||||||||||||||| | ||| || |||| |||| ||||| || || ||||
Sbjct 658245 CCTTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAGA 658186
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
||||||| || ||||| | ||| | || ||||| ||| ||||| ||| || |||
Sbjct 658185 TCAAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 658126
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| |||||||||| ||| || ||||| | || || ||||| ||||| |||||||| ||
Sbjct 658125 --CGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGAC 658068
Query 44326 GAAG 44329
||||
Sbjct 658067 GAAG 658064
>seq3
Length=2676204
Score = 111 bits (122), Expect = 1e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
|||||||| ||||||||||| | ||| || | || || || ||||| || ||||||
Sbjct 1949815 TCCTTTTGAATGTTGTAATCCGAAAGTGTACGACCATCCTCAAGTTGCTTACCAGCAAAG 1949874
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266
|| | ||| || ||||| | || | ||| ||||| || ||||| ||||| |
Sbjct 1949875 ATAAGACGTTGTTGATCGGGTGGGATACCCTCCTTATCTTGGATCTTTGACTTCACATTG 1949934
Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326
| ||||| || | ||||| ||||||| || || |||||||| || |||||||| |||
Sbjct 1949935 TCGATGGTATCCGATGATTCAACCTCCAAAGTGATTGTCTTTCCGGTAAGGGTCTTGACG 1949994
Query 44327 AAGATTTGCAT 44337
||||| |||||
Sbjct 1949995 AAGATCTGCAT 1950005
Score = 105 bits (116), Expect = 5e-18
Identities = 154/213 (72%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCG 44185
||||| ||| | ||||| |||||||| || |||||||| | || || || ||||
Sbjct 1949568 CACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAAAG--GGTTCTGCCGTCC 1949625
Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245
|||| ||||| || ||||||||||| || || ||||| | || | || ||||| |||
Sbjct 1949626 TCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCCTCCTTGTCC 1949685
Query 44246 GTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304
||||| || || | || | ||||| || | ||||||||||| | ||||| ||
Sbjct 1949686 TGAATCTT-TGATTTTACATTATCAATGGTATCTGACGATTCCACCTCTAATGTAATGGT 1949744
Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || || | ||||| || |||||||||||
Sbjct 1949745 CTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1949777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359988530974842
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |