Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017- 05-31] 426 sequences; 43,974,967 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq18 150 2e-31 seq3 84.2 2e-11 >seq18 Length=865119 Score = 150 bits (166), Expect = 2e-31 Identities = 175/234 (75%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || ||||||||||||| || || ||| |||||| || ||||| || || Sbjct 543477 ACCACCACCACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATC 543418 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 ||| |||||||| | || ||||| ||||| |||||||| |||| ||||||||||| | Sbjct 543417 GGAAAGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGG 543358 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGAC 41809 |||| | |||||||||| ||| || ||| || | || | |||||| ||| Sbjct 543357 TGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGAAGAC 543300 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| | || || ||||| ||||| || ||||| ||||| ||||||||| Sbjct 543299 TCAACCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 543246 >seq3 Length=2676204 Score = 84.2 bits (92), Expect = 2e-11 Identities = 123/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| ||||| ||||| ||||| | |||||| | || || || || || |||||||| Sbjct 1950325 CTCTTTCTGGATGTTGTAGTCACTCAAGGTGCGACCATCTTCAAGTTGTTTTCCGGCGAA 1950384 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAAC 41788 |||| ||||||||||| | |||| | |||||||||| ||| || ||| || Sbjct 1950385 AATCAAACGCTGTTGGTCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATT 1950444 Query 41789 GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCA 41840 | || | |||||||| ||||| ||||| | || || || ||||| |||| Sbjct 1950445 GTCG--ATGGTGTCGCTGGACTCAACCTCGAGGGTAATAGTCTTACCGGTCA 1950494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301538231200