Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myriosclerotinia_20scirpicola_20[genbank_20GCA_5F002162505.1_202017-
05-31] 426 sequences; 43,974,967 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq18 150 2e-31
seq3 84.2 2e-11
>seq18
Length=865119
Score = 150 bits (166), Expect = 2e-31
Identities = 175/234 (75%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
||| || || || ||||||||||||| || || ||| |||||| || ||||| || ||
Sbjct 543477 ACCACCACCACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATC 543418
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
||| |||||||| | || ||||| ||||| |||||||| |||| ||||||||||| |
Sbjct 543417 GGAAAGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGG 543358
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGAC 41809
|||| | |||||||||| ||| || ||| || | || | |||||| |||
Sbjct 543357 TGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGAAGAC 543300
Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| ||||| | || || ||||| ||||| || ||||| ||||| |||||||||
Sbjct 543299 TCAACCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 543246
>seq3
Length=2676204
Score = 84.2 bits (92), Expect = 2e-11
Identities = 123/172 (72%), Gaps = 4/172 (2%)
Strand=Plus/Plus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||| ||||| ||||| ||||| | |||||| | || || || || || ||||||||
Sbjct 1950325 CTCTTTCTGGATGTTGTAGTCACTCAAGGTGCGACCATCTTCAAGTTGTTTTCCGGCGAA 1950384
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAAC 41788
|||| ||||||||||| | |||| | |||||||||| ||| || ||| ||
Sbjct 1950385 AATCAAACGCTGTTGGTCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATT 1950444
Query 41789 GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCA 41840
| || | |||||||| ||||| ||||| | || || || ||||| ||||
Sbjct 1950445 GTCG--ATGGTGTCGCTGGACTCAACCTCGAGGGTAATAGTCTTACCGGTCA 1950494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462301538231200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |