Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq101 179 4e-40 seq2 138 1e-27 seq1 122 9e-23 seq124 114 1e-20 >seq101 Length=835023 Score = 179 bits (198), Expect = 4e-40 Identities = 323/468 (69%), Gaps = 3/468 (1%) Strand=Plus/Plus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028 || ||| || | |||||||||| ||||| | || |||||| | || | | | Sbjct 111415 CCTTGCATCCGAAAGAAGGCCGATTGGGCTATTCGGTGGATCCAGGACAAGAACTCATCT 111474 Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 || | | |||| ||||| || ||||| ||||| ||||| | ||||| || |||| Sbjct 111475 TTTGCCCAGCGTCTGGTTGCTTTCGCTGCCGTTGAGGGTATTTTCTTCAGTGGTGCTTTC 111534 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 || |||| || ||||||||||| || || |||||||| ||| |||| ||| ||||||| Sbjct 111535 GCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCTTGACATTCTCCAACGAG 111594 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 ||||| || | || ||||| ||||| |||||| |||||| | || | || ||| Sbjct 111595 CTCATTTCTCGTGATGAGGGCCTGCACACCGACTTCGCCTGTCTCCTACACTCTCACTTG 111654 Query 117209 GTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAG 117268 | | ||| | ||| | | | | | |||||| |||||||||| ||| ||||||| Sbjct 111655 AAGAACCGAGCCAGCAAGCAGATCATTCGTGAGATCATCACCGACGCTGTCAACATCGAG 111714 Query 117269 CAGCGCTTCCTCACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGAT 117327 ||| ||||| ||||| || ||||| |||| ||| ||||| | || | || || Sbjct 111715 CAGGAGTTCCTGACCGAGGCACTGCC-TTGCGCTCTTCTGGGCATGAACTCGGACCTCAT 111773 Query 117328 GTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCA 117387 | ||||||||||||||| || |||||| | || || | | || | | || ||| Sbjct 111774 GAAGCAATACATCGAGTTTGTTGCCGACCGTCTTCTTGTGGCACTTGGCAACGAGAAGAT 111833 Query 117388 CTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCT-CCTTGG 117434 ||||| | ||||||| | ||||| ||| | ||||| |||||| Sbjct 111834 TTACAAGTCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGG 111881 Score = 120 bits (132), Expect = 3e-22 Identities = 200/286 (70%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | |||||| | || ||| Sbjct 111025 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCCGAGGAAATTGATCTG 111084 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| || | ||||||| | || ||| | |||||| || ||| Sbjct 111085 TCCAAGGATCAACA-CGACTGGAACAATCGTCTGACTTCCGACGAGCAGTTCTTTATCTC 111143 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || ||||| || |||||| || ||||||||||| || || |||| ||||| Sbjct 111144 TCACATCCTTGCCTTCTTTGCCGCCTCTGATGGCATCGTCAATGAAAACTTGGTTGAGCG 111203 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| ||||| ||| | | ||||| || |||||||| || ||||| ||| || Sbjct 111204 ATTCAGCGGCGAGGTCCAGATCCCTGAGGCTCGATGCTTCTATGGTTTTCAAATCATGAT 111263 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||| ||| | ||||| || | || || ||||| || || ||| Sbjct 111264 GGAAAACATCCACTCTGAGACCTACTCATTGCTCATTGATACCTAC 111309 >seq2 Length=1180426 Score = 138 bits (152), Expect = 1e-27 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 395573 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 395632 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | |||| ||||| || || | ||||| ||||| || ||| |||| Sbjct 395633 TCCGACACTATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGA 395691 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| ||||| |||| ||| ||||| ||||| || || | || ||||| | |||||| Sbjct 395692 CCAGCAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGAGCGACTA 395751 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||||||| ||| || || || ||| | ||| Sbjct 395752 CAACATCCAGAAGGAGAGCACTCTTCACCTGGTGCTCCGC 395791 >seq1 Length=5508434 Score = 122 bits (134), Expect = 9e-23 Identities = 140/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 ||||| || |||||||| | || ||||| || | |||| | | | |||| | ||| Sbjct 3987466 ACGGGAAAGACCATCACTCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTT-AAGTC 3987408 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| ||||||||||| |||| ||||| || || |||| ||| || || Sbjct 3987407 GAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAGCGCCTTATCTTCGCTGGAAA 3987348 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||| ||||||||| |||||||||||||||||||||| |||| || || Sbjct 3987347 GCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCA 3987288 Query 40893 TCTAGT 40898 || || Sbjct 3987287 CCTCGT 3987282 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || || || |||| |||||| | | Sbjct 3986750 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACGATTACTCTCGAGGTCGAATCTTCT 3986691 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | ||||| || |||| ||||| |||||||||||| | |||||| Sbjct 3986690 GATACTATCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCAG 3986631 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| || | || || || |||||||| || | |||||||| | || |||||| Sbjct 3986630 CAGCGACTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGTGATTACAAC 3986571 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| | || || || || || Sbjct 3986570 ATTCAGAAGGAGTCGACCCTTCACCTGGT 3986542 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || || || || |||||| | || || || | || Sbjct 3986978 ATGCAAATCTTTGTCAAGACCTTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCATCC 3986919 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || |||| || || ||||| |||||| | |||||| Sbjct 3986918 GACACGATCGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAG 3986859 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| ||| || || ||||| || || | || ||| | |||||||||| Sbjct 3986858 CAGCGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACCTTGTCCGACTACAAC 3986799 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 3986798 ATCCAGAAGGAGTCAACTCTTCACCTTGT 3986770 Score = 102 bits (112), Expect = 8e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || ||||| ||||| ||||||||| |||| ||||| | | || | | | Sbjct 3987196 TCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGATACCATCG 3987137 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | | ||| || || | ||||| ||||| |||||| | ||||| || || || | Sbjct 3987136 ACAATGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAACAGCGCCTGA 3987077 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||| || ||||| ||||| || || | || |||||| ||||||||||||||| |||| Sbjct 3987076 TCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAAAAGG 3987017 Query 40880 AGGCCACGCTGCATCTAGT 40898 | | || || || || || Sbjct 3987016 AATCTACCCTTCACCTCGT 3986998 >seq124 Length=2242402 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||||||||| ||||||||| | || ||||| || | |||| | | Sbjct 2075866 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATT 2075807 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | || || ||||| || ||| |||| ||||| ||| | Sbjct 2075806 GACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGAATTCCCCCGGATCAGCAGCGATTG 2075747 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || ||||| || || | ||||| ||| ||||||||||||||||||| Sbjct 2075746 ATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACTCTCTCCGACTACAACATCCAGAAG 2075687 Query 40879 G 40879 | Sbjct 2075686 G 2075686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217982794640