Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01]
189 sequences; 43,559,170 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq1 129 5e-25
seq124 91.5 1e-13
seq2 91.5 1e-13
>seq1
Length=5508434
Score = 129 bits (142), Expect = 5e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | || ||||| || |||||||||||||| |||| ||||| ||||||
Sbjct 3986542 ACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTCAGGGTGCGACCATCCTCC 3986601
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || ||||| | || || |||||||| || || || ||||||||||||||| |
Sbjct 3986602 AGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGA 3986661
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| || || | |||||||||| || | ||| |||
Sbjct 3986662 ATCTTCGACTTGACATTGTCGATAGTATCAGAAGATTCGACCTCGAGAGTAATCGTCTTG 3986721
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || || || || |||||||||||
Sbjct 3986722 CCGGTGAGGGTCTTGACGAAAATCTGCAT 3986750
Score = 116 bits (128), Expect = 3e-21
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || ||||| || || |||||||| ||| | ||||| |||||||||||
Sbjct 3987287 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTG 3987346
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
||||||||| |||| || ||||||||||| ||||| |||||||||||||| || ||
Sbjct 3987347 CTTTCCAGCGAAGATAAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTT 3987406
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
||||| | |||| |||||||| | ||||||||| | || | || || || ||
Sbjct 3987407 CGACTTAACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTTCCCGT 3987466
Query 118715 CA 118716
||
Sbjct 3987467 CA 3987468
Score = 91.5 bits (100), Expect = 1e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
||||| || ||||| |||||||| ||| | || || |||||| ||||| || |||
Sbjct 3987010 GTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCA 3987069
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| |||| || ||||| || ||||| || || ||||||||||| || || ||
Sbjct 3987070 GCAAAGATCAGGCGCTGTTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTC 3987129
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| ||| |||| ||||||||||| ||| | || ||||| || || ||
Sbjct 3987130 ACATTGTCGATGGTATCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 3987189
Query 118722 TTTAC 118726
|| ||
Sbjct 3987190 TTGAC 3987194
>seq124
Length=2242402
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| | |||||| |||||| ||||| ||||| ||| ||||
Sbjct 2075688 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATC 2075747
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
| ||||||||||| || || || |||||||| || || || || || | ||
Sbjct 2075748 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCA 2075807
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| |||||||| | ||||||||| | ||| | || ||||| || || || || || |||
Sbjct 2075808 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAA 2075867
>seq2
Length=1180426
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | || ||| || || |||||||| ||||||| || || ||| ||
Sbjct 395785 CACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCTTC 395726
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || || ||| |||| || |||||||| || || || || |||||||||||
Sbjct 395725 AAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTG 395666
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| ||||| | ||| ||||| | ||| | ||| ||
Sbjct 395665 GATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTT 395606
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || || || || || ||||||||
Sbjct 395605 CCCCGTGAGGGTCTTGACGAAGATCTGCAT 395576
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433829400698788
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |