Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2 114 8e-21 seq1 104 2e-17 >seq2 Length=1180426 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | ||| || || ||||| |||||||||||| ||| ||| | || Sbjct 395787 AGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCT 395728 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| || || ||||||||||| ||| | | ||||||||| Sbjct 395727 TCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC 395668 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| || || || || | ||||| || Sbjct 395667 TGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 395608 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || ||||| || || || |||||||||||| Sbjct 395607 TTCCCCGTGAGGGTCTTGACGAAGATCTGCATC 395575 >seq1 Length=5508434 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || |||||||| | || || ||||| |||||||| || | Sbjct 3986524 CCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTC 3986583 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| |||||| || || ||||| || ||||||||||| ||| Sbjct 3986584 AGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGG 3986643 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || | ||| | |||||||| Sbjct 3986644 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGATTCGACC 3986703 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || ||||||||||| || || || || |||||||| Sbjct 3986704 TCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 3986750 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| |||||||||||||||| |||| | || Sbjct 3986767 AGAACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCC 3986826 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| ||||| ||||||||||| ||| | | |||||| || Sbjct 3986827 TCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCTGGGGGGATACCCTCCTTATCC 3986886 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | |||| |||| || || || || | ||||| || Sbjct 3986887 TGAATCTTCGACTTGACATTGTCGATCGTGTCGGATGACTCCACCTCAAGGGTGATAGTC 3986946 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| | || || |||||||| ||||| Sbjct 3986947 TTACCGGTCAAGGTCTTGACAAAGATTTGCAT 3986978 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | ||| ||| || || |||||||||||||| Sbjct 3986980 CCACCGCGAAGACGGAGGACGAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 3987039 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| || || || || ||||| |||||| ||| Sbjct 3987040 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGGGGG 3987099 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | || | ||| | || ||||| Sbjct 3987100 ATACCCTCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTATCCGAAGACTCGACC 3987159 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 || | |||||||| ||||| ||||| || || || Sbjct 3987160 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 3987194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071255823840