Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01]
189 sequences; 43,559,170 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq2 114 8e-21
seq1 104 2e-17
>seq2
Length=1180426
Score = 114 bits (126), Expect = 8e-21
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||||||| | ||| || || ||||| |||||||||||| ||| ||| | ||
Sbjct 395787 AGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCT 395728
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | ||||||||| ||||| || || ||||||||||| ||| | | |||||||||
Sbjct 395727 TCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC 395668
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | | | | || | |||| || || || || | ||||| ||
Sbjct 395667 TGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 395608
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| || ||||| || || || ||||||||||||
Sbjct 395607 TTCCCCGTGAGGGTCTTGACGAAGATCTGCATC 395575
>seq1
Length=5508434
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| || || | || |||||||| | || || ||||| |||||||| || |
Sbjct 3986524 CCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTC 3986583
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || | || |||| |||||| || || ||||| || ||||||||||| |||
Sbjct 3986584 AGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGG 3986643
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | || | | || | ||| | ||||||||
Sbjct 3986644 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGATTCGACC 3986703
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | || || || ||||||||||| || || || || ||||||||
Sbjct 3986704 TCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 3986750
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| || ||||| | ||| || ||||| |||||||||||||||| |||| | ||
Sbjct 3986767 AGAACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCC 3986826
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | |||||| || ||||| ||||| ||||||||||| ||| | | |||||| ||
Sbjct 3986827 TCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCTGGGGGGATACCCTCCTTATCC 3986886
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | || | | |||| |||| || || || || | ||||| ||
Sbjct 3986887 TGAATCTTCGACTTGACATTGTCGATCGTGTCGGATGACTCCACCTCAAGGGTGATAGTC 3986946
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| ||||| | || || |||||||| |||||
Sbjct 3986947 TTACCGGTCAAGGTCTTGACAAAGATTTGCAT 3986978
Score = 100 bits (110), Expect = 2e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| ||||| || | || || ||||| | ||| ||| || || ||||||||||||||
Sbjct 3986980 CCACCGCGAAGACGGAGGACGAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 3987039
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || || | ||||||||| || || || || ||||| |||||| |||
Sbjct 3987040 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGGGGG 3987099
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | || | | || | ||| | || |||||
Sbjct 3987100 ATACCCTCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTATCCGAAGACTCGACC 3987159
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
|| | |||||||| ||||| ||||| || || ||
Sbjct 3987160 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 3987194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323071255823840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |