Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq134 141 2e-28 seq102 98.7 2e-15 >seq134 Length=152861 Score = 141 bits (156), Expect = 2e-28 Identities = 423/642 (66%), Gaps = 23/642 (4%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| | ||| | | ||| | ||||| || || ||| ||| || ||||| || || Sbjct 56652 GATTTCAACTACCAATACTTCGGCTTCAAGACTCTAGAGCGATCCTACCTCCTGAAGATC 56711 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 ||||||||||| || || ||| |||||||||| | ||||| || |||||||| || Sbjct 56712 GATGGCAAGATTGTTGAGCGACCTCAGCACATGATCATGCGTGTCGCTGTCGGCATCTGG 56771 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATG-AGTGAACGCTGGATGAC 248987 || ||||| ||| | || || ||||| |||| | ||| | | ||| | | || Sbjct 56772 GGTGACGACATCGAGCGTGTCCTGGAGACCTACAACCTCATGTCCAGCAAGCT-GTTCAC 56830 Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTA-CCGTCAACAATCAGCTGAGCTCGTGCT 249046 || || |||| || || ||||| || |||| || ||| | ||||||| || |||| Sbjct 56831 TCACGCTTCACCAACCCTGTTCAATGCGGGTACCCCTCAGC-CTCAGCTGTCTTCCTGCT 56889 Query 249047 TTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC-- 249104 | || ||| |||| | || ||| ||||||| || || ||||| || | |||| Sbjct 56890 TCCTGGTTGACATGAAGGAAGACAGCATCGACGGTATCTACGACACCCTCA---AGACTT 56946 Query 249105 -GGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGT-CTCCAACATCCGAGCG 249162 || | ||| || || | || || || ||||||||| ||| | || | ||||| || Sbjct 56947 GTGCCATGATCTCCAAGATGGCAGGAGGCATCGGTCTCAACGTGCACCGA-ATCCGTGCC 57005 Query 249163 AAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGA 249222 | || || ||||| ||||| || || | ||||| || | || | || || Sbjct 57006 ACCGGCTCTTACATTGCCGGTACCAACGGCACCTCCAATGGTGTCATTCCTATGCTCCGT 57065 Query 249223 TGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTC 249279 ||| | ||| || | | | || |||||| ||| | ||| || | ||| Sbjct 57066 GTCTTCAACAACACTGCTCGATACGTCGACCAGGGCGGCAACAAGCGACCCGGTGCTTTC 57125 Query 249280 GCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAAC 249339 ||||| || | || ||||||||||| | || || ||| |||| || |||||| Sbjct 57126 GCCATTTACCTTGAGCCCTGGCACGCCGACGTTTTTGAATTCTTGGATCTGCGCAAGAAC 57185 Query 249340 AACGGCAACG----AGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGA 249395 ||||||| | ||| | | || |||||| | |||| | ||||||| || |||| Sbjct 57186 CACGGCAAGGAAGAAGCCC----GCGCTCGTGACTTGTTCTTGGCCCTGTGGATCCCCGA 57241 Query 249396 CTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCT 249437 |||||||| || ||| || ||||||| ||||| || Sbjct 57242 TCTGTTCATGAAGCGTGTCGAGAAGAACGGCGACTGGACTCT 57283 >seq102 Length=2690835 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 254017 TCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGT 254076 || |||| || || || || ||||||||||| || ||||| || || |||||| | | | Sbjct 430309 TCTACGGCCCCCCGGGCACCGGCAAGACGTCGACAATCCTCGCCCTCGCCCGACGCATCT 430250 Query 254077 TGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGT 254136 |||| | |||||| | || ||||||||||| ||||| || ||||| ||||| Sbjct 430249 ACGGCGCCGCCAACATGCGCCAGATGGTGCTCGAGCTCAACGCCTCGGACGATCGCGGCA 430190 Query 254137 TGGACGTCGTCCGCGACAAGATCAAGACTTTC 254168 | ||||| || ||||| |||||||||| ||| Sbjct 430189 TCGACGTGGTGCGCGAGCAGATCAAGACGTTC 430158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073763799807552