Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01]
189 sequences; 43,559,170 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq134 286 3e-72
seq1 123 2e-23
seq2 104 2e-17
seq101 91.5 1e-13
>seq134
Length=152861
Score = 286 bits (316), Expect = 3e-72
Identities = 641/957 (67%), Gaps = 8/957 (1%)
Strand=Plus/Minus
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
|| || |||||||| || || ||||| || | |||||| | || || || ||
Sbjct 57577 GATGCGAGATTGCAAACAGCGACCTCATCGGGAGCACAGTACTCGATGATCTCAGTGCAA 57518
Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146
|| ||| || || ||||||| || ||||||||||||| || ||||| |||
Sbjct 57517 AGGTTGGAACTGCGAATGGTGCCCAGGTTCTTCTGGTTGCTTTTACGGTTGCAGCTGTCC 57458
Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206
|||||||||||| | || |||| || ||| ||| | ||| | ||| || |||||
Sbjct 57457 TTGTAGAGCATGAAAGGGTTGCCGGTTTCGGTCTGAGCCTCCAAGATGGCATACCACAGC 57398
Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT--GCCTTCTTCCTCGTACTTTTGGTACAACG 23264
|||| || | | ||| || |||| ||| | | ||| ||||| | ||||| |
Sbjct 57397 TTCTGGGCCTTCATG-GTCTTGCG-ACCTTTGCCAGCCTGCTCATACTTCTCGTACAGCT 57340
Query 23265 CGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGAC 23324
|| || || ||||||| || || || || ||||| | | | || |||||||||
Sbjct 57339 TCTCGAACTCATCACCGTAGCAATCAGCAAGCCCGGGGCACTCATTGGGGCACATGAGAG 57280
Query 23325 TCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGA 23384
|||| || || || || || |||| || ||||| || ||||| || || |||
Sbjct 57279 TCCAGTCGCCGTTCTTCTCGACACGCTTCATGAACAGATCGGGGATCCACAGGGCCAAGA 57220
Query 23385 ACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCA 23444
||| || || ||||| | || || |||||| |||||| || |||||| || || |
Sbjct 57219 ACAAGTCACGAGCGCGGGCTTCTTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAATTCAA 57160
Query 23445 ACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGC 23504
| ||||| || ||||| ||||| ||||||| ||| || || || |||| ||| |||||||
Sbjct 57159 AAACGTCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAAGCACCGGGTCGCTTGTTGCCGC 57100
Query 23505 CCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGG 23564
|||| |||||||| || || ||||||||| | || | ||||| || | || ||| ||||
Sbjct 57099 CCTGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATAGGAATGACACCATTGG 57040
Query 23565 ACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAAC 23624
| | |||| || || | || || | || || | ||| |||| || ||
Sbjct 57039 AGGTGCCGTTGGTACCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGCACGTTGAGAC 56980
Query 23625 CTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCT 23684
| |||||||| || || || ||||| || || || || ||||||||||| || |
Sbjct 56979 CGATGCCTCCTGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCGT 56920
Query 23685 CGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAG 23744
|||||||||| || || | | |||| ||| || ||||||| || | | || |||
Sbjct 56919 CGATGCTGTCTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGGCTGAGGGGTAC 56860
Query 23745 CGGCCGAGAACAGTGTCGGGCTGGCGTGCGT--AAAGTATCCATTCGACATTAGATTGTA 23802
| || |||||| || || ||||| || | || | | | ||||| || |||||
Sbjct 56859 CCGCATTGAACAGGGTTGGTGAAGCGTGAGTGAACAGCTTGC--TGGACATGAGGTTGTA 56802
Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862
|| || | | | || ||||| || || || |||| ||||| ||||| |||||
Sbjct 56801 GGTCTCCAGGACACGCTCGATGTCGTCACCCCAGATGCCGACAGCGACACGCATGATCAT 56742
Query 23863 GTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGT 23922
|| ||||||| ||| || | ||| | || || | || || || || | | ||
Sbjct 56741 GTGCTGAGGTCGCTCAACAATCTTGCCATCGATCTTCAGGAGGTAGGATCGCTCTAGAGT 56682
Query 23923 TTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979
|| || || || || | ||||| || ||||| || | || ||||| || | |||
Sbjct 56681 CTTGAAGCCGAAGTATTGGTAGTTGAAATCACGGTCATAGACGATGGCAGAGTCCAA 56625
>seq1
Length=5508434
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| ||||| || || ||||| ||||| || |||| || ||| | ||
Sbjct 3986750 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACGATTACTCTCGAGGTCGAATCTTCT 3986691
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | |||| | ||||| || || |||||||| ||| | || || ||||||
Sbjct 3986690 GATACTATCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCAG 3986631
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| || || || ||||| || ||| |||| || | || |||| ||||| |||
Sbjct 3986630 CAGCGACTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGTGATTACAAC 3986571
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
||||| || || ||||| ||||| ||||| || | || | ||||||
Sbjct 3986570 ATTCAGAAGGAGTCGACCCTTCACCTGGTTCTCCGTCTCCGTGGCGGT 3986523
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || ||||| |||| || || || |||||| | || || || | |||
Sbjct 3986978 ATGCAAATCTTTGTCAAGACCTTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCATCC 3986919
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| || || ||| ||||| || | || || ||||||
Sbjct 3986918 GACACGATCGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAG 3986859
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| || || ||||| || || ||| | || || || || ||| || |||
Sbjct 3986858 CAGCGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACCTTGTCCGACTACAAC 3986799
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| || || || || |||||||| || || || |||| | || ||||
Sbjct 3986798 ATCCAGAAGGAGTCAACTCTTCACCTTGTTCTCCGACTTCGTGGTGGTA 3986750
>seq2
Length=1180426
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| || ||||| ||||| || || || || ||||||||| | || || || |
Sbjct 395573 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 395632
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||||||| | |||| | ||||| | || ||||||||| || | || || |||
Sbjct 395633 TCCGACACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 395692
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|||||||| || || ||||| ||||| ||| | ||||| || ||||||| ||
Sbjct 395693 CAGCAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGAGCGACTAC 395752
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || || |||||||| ||||| ||
Sbjct 395753 AACATCCAGAAGGAGAGCACTCTTCACCTGGTGCT 395787
>seq101
Length=835023
Score = 91.5 bits (100), Expect = 1e-13
Identities = 227/338 (67%), Gaps = 10/338 (3%)
Strand=Plus/Plus
Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022
|| ||| || | || | || ||||| ||||| || ||||| ||||| || |||||
Sbjct 111475 TTTGCCCAGCGTCTGGTTGCTTTCGCTGCCGTTGAGGGTATTTTCTTCAGTGGT-GCTTT 111533
Query 58023 -GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081
||| | || || ||| | ||||| || || || ||||| ||| |||| || ||||||
Sbjct 111534 CGCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCTTGACATTCTCCAACGA 111593
Query 58082 GTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT 58141
| | || || || || ||||| || || || || || || || || | |||||||| |
Sbjct 111594 GCTCATTTCTCGTGATGAGGGCCTGCACACCGACTTCGCCTGTCTCCTACACTCTCAC-T 111652
Query 58142 TGTCAATAAACCGACGCGGGAT-CGCATCTTG---GACATTATCACCGAGGCGGTCGCGA 58197
|| | |||||| | | | | ||| | || || |||||||| || ||| |
Sbjct 111653 TG---AAGAACCGAGCCAGCAAGCAGATCATTCGTGAGATCATCACCGACGCTGTCAACA 111709
Query 58198 TCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATT 58257
|||| | ||||| | ||||| || || || || | || || |||||| ||
Sbjct 111710 TCGAGCAGGAGTTCCTGACCGAGGCACTGCCTTGCGCTCTTCTGGGCATGAACTCGGACC 111769
Query 58258 TGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTT 58295
| ||| | ||||| ||||||||||||||| | |||
Sbjct 111770 TCATGAAGCAATACATCGAGTTTGTTGCCGACCGTCTT 111807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445765346876880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |