Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq134 286 3e-72 seq1 123 2e-23 seq2 104 2e-17 seq101 91.5 1e-13 >seq134 Length=152861 Score = 286 bits (316), Expect = 3e-72 Identities = 641/957 (67%), Gaps = 8/957 (1%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 || || |||||||| || || ||||| || | |||||| | || || || || Sbjct 57577 GATGCGAGATTGCAAACAGCGACCTCATCGGGAGCACAGTACTCGATGATCTCAGTGCAA 57518 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| || || ||||||| || ||||||||||||| || ||||| ||| Sbjct 57517 AGGTTGGAACTGCGAATGGTGCCCAGGTTCTTCTGGTTGCTTTTACGGTTGCAGCTGTCC 57458 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || |||| || ||| ||| | ||| | ||| || ||||| Sbjct 57457 TTGTAGAGCATGAAAGGGTTGCCGGTTTCGGTCTGAGCCTCCAAGATGGCATACCACAGC 57398 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT--GCCTTCTTCCTCGTACTTTTGGTACAACG 23264 |||| || | | ||| || |||| ||| | | ||| ||||| | ||||| | Sbjct 57397 TTCTGGGCCTTCATG-GTCTTGCG-ACCTTTGCCAGCCTGCTCATACTTCTCGTACAGCT 57340 Query 23265 CGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGAC 23324 || || || ||||||| || || || || ||||| | | | || ||||||||| Sbjct 57339 TCTCGAACTCATCACCGTAGCAATCAGCAAGCCCGGGGCACTCATTGGGGCACATGAGAG 57280 Query 23325 TCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGA 23384 |||| || || || || || |||| || ||||| || ||||| || || ||| Sbjct 57279 TCCAGTCGCCGTTCTTCTCGACACGCTTCATGAACAGATCGGGGATCCACAGGGCCAAGA 57220 Query 23385 ACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCA 23444 ||| || || ||||| | || || |||||| |||||| || |||||| || || | Sbjct 57219 ACAAGTCACGAGCGCGGGCTTCTTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAATTCAA 57160 Query 23445 ACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGC 23504 | ||||| || ||||| ||||| ||||||| ||| || || || |||| ||| ||||||| Sbjct 57159 AAACGTCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAAGCACCGGGTCGCTTGTTGCCGC 57100 Query 23505 CCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGG 23564 |||| |||||||| || || ||||||||| | || | ||||| || | || ||| |||| Sbjct 57099 CCTGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATAGGAATGACACCATTGG 57040 Query 23565 ACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAAC 23624 | | |||| || || | || || | || || | ||| |||| || || Sbjct 57039 AGGTGCCGTTGGTACCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGCACGTTGAGAC 56980 Query 23625 CTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCT 23684 | |||||||| || || || ||||| || || || || ||||||||||| || | Sbjct 56979 CGATGCCTCCTGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCGT 56920 Query 23685 CGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAG 23744 |||||||||| || || | | |||| ||| || ||||||| || | | || ||| Sbjct 56919 CGATGCTGTCTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGGCTGAGGGGTAC 56860 Query 23745 CGGCCGAGAACAGTGTCGGGCTGGCGTGCGT--AAAGTATCCATTCGACATTAGATTGTA 23802 | || |||||| || || ||||| || | || | | | ||||| || ||||| Sbjct 56859 CCGCATTGAACAGGGTTGGTGAAGCGTGAGTGAACAGCTTGC--TGGACATGAGGTTGTA 56802 Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862 || || | | | || ||||| || || || |||| ||||| ||||| ||||| Sbjct 56801 GGTCTCCAGGACACGCTCGATGTCGTCACCCCAGATGCCGACAGCGACACGCATGATCAT 56742 Query 23863 GTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGT 23922 || ||||||| ||| || | ||| | || || | || || || || | | || Sbjct 56741 GTGCTGAGGTCGCTCAACAATCTTGCCATCGATCTTCAGGAGGTAGGATCGCTCTAGAGT 56682 Query 23923 TTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 || || || || || | ||||| || ||||| || | || ||||| || | ||| Sbjct 56681 CTTGAAGCCGAAGTATTGGTAGTTGAAATCACGGTCATAGACGATGGCAGAGTCCAA 56625 >seq1 Length=5508434 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || ||||| ||||| || |||| || ||| | || Sbjct 3986750 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACGATTACTCTCGAGGTCGAATCTTCT 3986691 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | ||||| || || |||||||| ||| | || || |||||| Sbjct 3986690 GATACTATCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCAG 3986631 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || ||||| || ||| |||| || | || |||| ||||| ||| Sbjct 3986630 CAGCGACTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGTGATTACAAC 3986571 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || ||||| ||||| ||||| || | || | |||||| Sbjct 3986570 ATTCAGAAGGAGTCGACCCTTCACCTGGTTCTCCGTCTCCGTGGCGGT 3986523 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||| || || || |||||| | || || || | ||| Sbjct 3986978 ATGCAAATCTTTGTCAAGACCTTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCATCC 3986919 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||| ||||| || | || || |||||| Sbjct 3986918 GACACGATCGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAG 3986859 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| || || ||| | || || || || ||| || ||| Sbjct 3986858 CAGCGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACCTTGTCCGACTACAAC 3986799 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || |||||||| || || || |||| | || |||| Sbjct 3986798 ATCCAGAAGGAGTCAACTCTTCACCTTGTTCTCCGACTTCGTGGTGGTA 3986750 >seq2 Length=1180426 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| || || || || ||||||||| | || || || | Sbjct 395573 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 395632 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| | |||| | ||||| | || ||||||||| || | || || ||| Sbjct 395633 TCCGACACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 395692 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||| ||||| ||| | ||||| || ||||||| || Sbjct 395693 CAGCAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGAGCGACTAC 395752 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || |||||||| ||||| || Sbjct 395753 AACATCCAGAAGGAGAGCACTCTTCACCTGGTGCT 395787 >seq101 Length=835023 Score = 91.5 bits (100), Expect = 1e-13 Identities = 227/338 (67%), Gaps = 10/338 (3%) Strand=Plus/Plus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022 || ||| || | || | || ||||| ||||| || ||||| ||||| || ||||| Sbjct 111475 TTTGCCCAGCGTCTGGTTGCTTTCGCTGCCGTTGAGGGTATTTTCTTCAGTGGT-GCTTT 111533 Query 58023 -GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 ||| | || || ||| | ||||| || || || ||||| ||| |||| || |||||| Sbjct 111534 CGCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCTTGACATTCTCCAACGA 111593 Query 58082 GTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT 58141 | | || || || || ||||| || || || || || || || || | |||||||| | Sbjct 111594 GCTCATTTCTCGTGATGAGGGCCTGCACACCGACTTCGCCTGTCTCCTACACTCTCAC-T 111652 Query 58142 TGTCAATAAACCGACGCGGGAT-CGCATCTTG---GACATTATCACCGAGGCGGTCGCGA 58197 || | |||||| | | | | ||| | || || |||||||| || ||| | Sbjct 111653 TG---AAGAACCGAGCCAGCAAGCAGATCATTCGTGAGATCATCACCGACGCTGTCAACA 111709 Query 58198 TCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATT 58257 |||| | ||||| | ||||| || || || || | || || |||||| || Sbjct 111710 TCGAGCAGGAGTTCCTGACCGAGGCACTGCCTTGCGCTCTTCTGGGCATGAACTCGGACC 111769 Query 58258 TGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTT 58295 | ||| | ||||| ||||||||||||||| | ||| Sbjct 111770 TCATGAAGCAATACATCGAGTTTGTTGCCGACCGTCTT 111807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765346876880