Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq134 158 2e-33 seq101 104 3e-17 >seq134 Length=152861 Score = 158 bits (174), Expect = 2e-33 Identities = 341/503 (68%), Gaps = 18/503 (4%) Strand=Plus/Minus Query 80050 TGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATG 80109 ||||| || || | ||| ||||| | | | || ||||| ||||| || ||||| || | | Sbjct 57148 TGCCAGGGCTCAAGGTAAATGGCGAAAGCACCGGGTCGCTTGTTGCCGCCCTGGTCGACG 57089 Query 80110 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTG 80169 |||| ||| ||||| || | || | | ||| ||||| | ||||||||| || || ||| Sbjct 57088 TATCGAGCAGTGTTGTTGAAGACACGGAGCATAGGAATGACACCATTGGAGGTGCCGTTG 57029 Query 80170 GTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGACCTATTCCCC 80227 || |||| || || || ||||||| || | | |||| |||| || || | Sbjct 57028 GTACCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGCACGTTGA--GACCGATGCCTC 56971 Query 80228 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTAT 80287 ||||||| || ||||| | || || || | || || ||||| || || ||||| | Sbjct 56970 CTGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCGTCGATGCTGT 56911 Query 80288 CATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 80347 | || |||||| || || || ||| ||||| || | || || |||||||| | Sbjct 56910 CTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGGCTGAGGGGTACCCGCATTGA 56851 Query 80348 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATA- 80406 | | ||| || |||||||| || ||| || |||| || ||||| ||||| | Sbjct 56850 ACAGGGTTGGTGAAGCGTGAGTGAACAGCTTGCTGGACATGAGGTTGTAGGTCTCCAGGA 56791 Query 80407 ---GCT-GAT-TCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCT 80461 ||| ||| || | |||| |||| || || ||||||||||| | |||||||| Sbjct 56790 CACGCTCGATGTCGTCACCCCA--GATG----CCGACAGCGACACGCATGATCATGTGCT 56737 Query 80462 GAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAA 80521 |||||| ||||| |||||| || || |||| | ||| ||| || | ||| || | Sbjct 56736 GAGGTCGCTCAACAATCTTGCCATCGATCTTCAGGAGGTAGGATCGCTCTAGAGTCTTGA 56677 Query 80522 AACCAAAATAGTTGTA--TGAAA 80542 | || || || | ||| ||||| Sbjct 56676 AGCCGAAGTATTGGTAGTTGAAA 56654 >seq101 Length=835023 Score = 104 bits (114), Expect = 3e-17 Identities = 150/211 (71%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| ||||| ||| |||||| ||||| || | | ||| || |||||||| || || | Sbjct 111636 ACAGGCGAAGTCGGTGTGCAGGCCCTCATCACGAGAAATGAGCTCGTTGGAGAATGTCAA 111577 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 || ||||| || |||||||| || ||||| || |||||||| || | ||| ||||| Sbjct 111576 GCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAAGCACCACTGAAGAA 111517 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT---GTCATG 50135 || || || || || || || ||||| || | || || || | | | ||| || Sbjct 111516 AATACCCTCAACGGCAGCGAAAGCAACCAGACGCTGGGCAAAAGATGAGTTCTTGTCCTG 111457 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTT 50166 |||||| ||||||||||||||||||| Sbjct 111456 GATCCACCGAATAGCCCAATCGGCCTTCTTT 111426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267103089960