Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq134 152 7e-32 seq101 91.5 2e-13 >seq134 Length=152861 Score = 152 bits (168), Expect = 7e-32 Identities = 340/503 (68%), Gaps = 18/503 (4%) Strand=Plus/Minus Query 72133 TGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATG 72192 ||||| || || | ||| ||||| | | | || || || ||||| || ||||| || | | Sbjct 57148 TGCCAGGGCTCAAGGTAAATGGCGAAAGCACCGGGTCGCTTGTTGCCGCCCTGGTCGACG 57089 Query 72193 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTG 72252 |||| ||| ||||| || | || | | ||| ||||| | ||||||||| | || ||| Sbjct 57088 TATCGAGCAGTGTTGTTGAAGACACGGAGCATAGGAATGACACCATTGGAGGTGCCGTTG 57029 Query 72253 GTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TGCTAATTGATAGACCTATTCCCC 72310 || |||| || || || ||||||| || ||| |||| |||| || || | Sbjct 57028 GTACCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGCACGTTGA--GACCGATGCCTC 56971 Query 72311 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 72370 ||||||| || ||||| | || || || | || || ||||| || || || || | Sbjct 56970 CTGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCGTCGATGCTGT 56911 Query 72371 CATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 72430 | ||| |||||| || || || ||| ||||| || | || || |||||||| | Sbjct 56910 CTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGGCTGAGGGGTACCCGCATTGA 56851 Query 72431 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATA- 72489 | | ||| || |||||||| || ||| || |||| || ||||| ||||| | Sbjct 56850 ACAGGGTTGGTGAAGCGTGAGTGAACAGCTTGCTGGACATGAGGTTGTAGGTCTCCAGGA 56791 Query 72490 ---GCT-GAT-TCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCT 72544 ||| ||| || | |||| |||| || || ||||||||||| | ||| |||| Sbjct 56790 CACGCTCGATGTCGTCACCCCA--GATG----CCGACAGCGACACGCATGATCATGTGCT 56737 Query 72545 GAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAA 72604 |||||| ||||| |||||| || || |||| | ||||||| || | ||| || | Sbjct 56736 GAGGTCGCTCAACAATCTTGCCATCGATCTTCAGGAGGTAGGATCGCTCTAGAGTCTTGA 56677 Query 72605 AACCAAAATAGTTGTA--TGAAA 72625 | || || || | ||| ||||| Sbjct 56676 AGCCGAAGTATTGGTAGTTGAAA 56654 >seq101 Length=835023 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| ||||| ||| |||||| |||||||| | | ||| | |||||||| || || | Sbjct 111636 ACAGGCGAAGTCGGTGTGCAGGCCCTCATCACGAGAAATGAGCTCGTTGGAGAATGTCAA 111577 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 || ||||| || |||||||| || ||||| || || ||||| || | ||| ||||| Sbjct 111576 GCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAAGCACCACTGAAGAA 111517 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATG 42240 || || || || || || || |||| || | || || || | | ||| || Sbjct 111516 AATACCCTCAACGGCAGCGAAAGCAACCAGACGCTGGGCAAAAGATGAGTTCTTGTCCTG 111457 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTT 42271 |||||| ||||||||||||||||||| Sbjct 111456 GATCCACCGAATAGCCCAATCGGCCTTCTTT 111426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137614433640