Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01]
189 sequences; 43,559,170 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq1 91.5 1e-13
seq2 84.2 2e-11
>seq1
Length=5508434
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||| || |||||| ||||||||||||||| || || | ||||||||||||
Sbjct 3986548 TGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTCAGGGTGCGACCATCCTCCAGCTGC 3986607
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
||||| | |||| | |||||||| || || | | |||||||| ||| |||
Sbjct 3986608 TTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGAATCTTC 3986667
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||||| | | || ||||| | ||| || ||||| || || || || ||||||
Sbjct 3986668 GACTTGACATTGTCGATAGTATCAGAAGATTCGACCTCGAGAGTAATCGTCTTGCCGGTG 3986727
Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726
|| || || || |||||||||||
Sbjct 3986728 AGGGTCTTGACGAAAATCTGCAT 3986750
>seq2
Length=1180426
Score = 84.2 bits (92), Expect = 2e-11
Identities = 147/212 (69%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||| ||||||||||| || |||||||| || || ||| | || || ||||||
Sbjct 395778 TGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCTTCAAGCTGC 395719
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| ||| || | || | |||||||| ||| || | | ||||||||| || ||
Sbjct 395718 TTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTG 395659
Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701
||||| | | || || || |||| ||||||| ||| | || || || || || |
Sbjct 395658 GACTTGACGTTGTCG--ATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCG 395601
Query 48702 TGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733
|||| || || || || ||||||||| || ||
Sbjct 395600 TGAGGGTCTTGACGAAGATCTGCATCTTGCCT 395569
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421250229674189
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |