Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 1e-13 seq2 84.2 2e-11 >seq1 Length=5508434 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| ||||||||||||||| || || | |||||||||||| Sbjct 3986548 TGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTCAGGGTGCGACCATCCTCCAGCTGC 3986607 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| | |||| | |||||||| || || | | |||||||| ||| ||| Sbjct 3986608 TTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGAATCTTC 3986667 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | || ||||| | ||| || ||||| || || || || |||||| Sbjct 3986668 GACTTGACATTGTCGATAGTATCAGAAGATTCGACCTCGAGAGTAATCGTCTTGCCGGTG 3986727 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||||||||| Sbjct 3986728 AGGGTCTTGACGAAAATCTGCAT 3986750 >seq2 Length=1180426 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||||||||||| || |||||||| || || ||| | || || |||||| Sbjct 395778 TGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCTTCAAGCTGC 395719 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| ||| || | | ||||||||| || || Sbjct 395718 TTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTG 395659 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || || || |||| ||||||| ||| | || || || || || | Sbjct 395658 GACTTGACGTTGTCG--ATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCG 395601 Query 48702 TGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 |||| || || || || ||||||||| || || Sbjct 395600 TGAGGGTCTTGACGAAGATCTGCATCTTGCCT 395569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250229674189