Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01]
189 sequences; 43,559,170 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq1 134 1e-26
seq101 131 2e-25
seq2 113 4e-20
>seq1
Length=5508434
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || || | ||| || || | || | |||||||||||| |||||||||||||| |||
Sbjct 3986524 CCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTC 3986583
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| |||||||| || || | || | ||||||||||| || |||
Sbjct 3986584 AGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGG 3986643
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| || ||| ||||| | || | |||||| | || ||||
Sbjct 3986644 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGATTCGACC 3986703
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| |||| || || ||||| || || || ||||||||||||||
Sbjct 3986704 TCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 3986750
Score = 104 bits (114), Expect = 2e-17
Identities = 153/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||| | ||| || || | || | ||| || |||||||| |||||||| |||
Sbjct 3986980 CCACCGCGAAGACGGAGGACGAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 3987039
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || ||||| ||||||||||| || |||| | ||||| ||||| || |||
Sbjct 3987040 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGGGGG 3987099
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| ||| ||| | | || | ||||| | |||||||
Sbjct 3987100 ATACCCTCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTATCCGAAGACTCGACC 3987159
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
|||| ||| | ||| || || || || || || ||||
Sbjct 3987160 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 3987196
Score = 93.3 bits (102), Expect = 4e-14
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096
||| |||||||| || |||||||| ||| | |||||| |||||| |||||||| ||
Sbjct 3987293 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCC 3987352
Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156
||| |||| | |||||||| ||||||||||| || || ||||| ||| ||| |||
Sbjct 3987353 AGCGAAGATAAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTT 3987412
Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGA 131185
| | || | || || | ||||||||
Sbjct 3987413 AACGTTGTCGATGGTGTCCGAGGACTCGA 3987441
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097
|| |||||||| || |||||||| ||| || ||| || ||||| |||||||| ||
Sbjct 3986782 GTTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCAAGCTGCTTTCCG 3986841
Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157
||| |||| | ||||||||||| || ||||| || || || || || ||| ||||
Sbjct 3986842 GCGAAGATGAGTCGCTGCTGGTCTGGGGGGATACCCTCCTTATCCTGAATCTTCGACTTG 3986901
Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217
| | || | || |||| ||||| | || | ||| | || |||||||| | ||
Sbjct 3986902 ACATTGTCGATCGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTACCGGTCAAGGTC 3986961
Query 131218 TTTACGAAAATCTGCAT 131234
|| || || || |||||
Sbjct 3986962 TTGACAAAGATTTGCAT 3986978
>seq101
Length=835023
Score = 131 bits (144), Expect = 2e-25
Identities = 347/515 (67%), Gaps = 15/515 (3%)
Strand=Plus/Plus
Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACT 46146
|| ||| | || ||||| |||| ||||| || ||||||| | || | | | ||
Sbjct 111415 CCTTGCATCCGAAAGAAGGCCGATTGGGCTATTCGGTGGATCCAGGACAAGAACTCATCT 111474
Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttC--TGGCAGTT 46204
|| ||| ||||| |||| || || || || ||||| | |||| ||| ||| ||
Sbjct 111475 TTTGCCCAGCGTCTGGTTGCTTTCGCTGCCGTTGAGGG--TATTTTCTTCAGTGGTGCTT 111532
Query 46205 TTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263
| || ||||||| | |||| || | || | ||||||| ||| |||| || ||||
Sbjct 111533 TCGCGTCCATCTTCTGGCTCAAGAAGCGTGGTC-TCATGCCTGGCTTGACATTCTCCAAC 111591
Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACT 46323
||||| || || || || ||||||||||| || ||||| || |||||| ||| || ||
Sbjct 111592 GAGCTCATTTCTCGTGATGAGGGCCTGCACACCGACTTCGCCTGTCTC--CTA-CACTCT 111648
Query 46324 CGCGTGCACGA-CAAGCTTGCGCCCGACACCGTGC-TGAGCATGTTCAAGGAGGCGGTGG 46381
| | || | | | ||| || | | | | | | |||| || ||| || || ||
Sbjct 111649 CACTTGAAGAACCGAGCCAGCAAGC-AGATCATTCGTGAG-ATCATCACCGACGCTGTCA 111706
Query 46382 CCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCAC 46441
||| ||| ||||||| | || | |||||||| || || |||||||||||| |
Sbjct 111707 ACATCGAGCAGGAGTTCCTGACCGAGGCACTGCCTTGCGCTCTTCTGGGCATGAACTCGG 111766
Query 46442 AGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGC 46501
| ||| | |||||||||||||| || ||||| || || ||| ||| | |
Sbjct 111767 ACCTCATGAAGCAATACATCGAGTTTGTTGCCGACCGTCTTCTTGTGGCACTTGGCAACG 111826
Query 46502 CGAAGCATTTTCACG-CGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGC 46560
|||| |||| || | | ||| || || || || ||| | ||||||||||| | |||
Sbjct 111827 AGAAG-ATTTACAAGTCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGC 111885
Query 46561 AAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595
|| || || || ||||| ||||| || || || ||
Sbjct 111886 AAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTA 111920
>seq2
Length=1180426
Score = 113 bits (124), Expect = 4e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102
|||||| || |||||||| ||||||| ||| || || || ||||||||||| ||| |
Sbjct 395767 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAA 395708
Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162
||| | |||||||||||||| || ||||| || ||||| ||| || ||||| |
Sbjct 395707 GATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 395648
Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222
|| | ||| |||| ||||| | || | ||| | || || || || || || || ||
Sbjct 395647 GTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 395588
Query 131223 GAAAATCTGCAT 131234
||| ||||||||
Sbjct 395587 GAAGATCTGCAT 395576
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472011684869760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |