Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1 134 1e-26 seq101 131 2e-25 seq2 113 4e-20 >seq1 Length=5508434 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | || | |||||||||||| |||||||||||||| ||| Sbjct 3986524 CCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTC 3986583 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || || | || | ||||||||||| || ||| Sbjct 3986584 AGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGG 3986643 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||||| | || | |||||| | || |||| Sbjct 3986644 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGATTCGACC 3986703 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| || || ||||| || || || |||||||||||||| Sbjct 3986704 TCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 3986750 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || | || | ||| || |||||||| |||||||| ||| Sbjct 3986980 CCACCGCGAAGACGGAGGACGAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 3987039 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| ||||||||||| || |||| | ||||| ||||| || ||| Sbjct 3987040 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGGGGG 3987099 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||| | | || | ||||| | ||||||| Sbjct 3987100 ATACCCTCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTATCCGAAGACTCGACC 3987159 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 |||| ||| | ||| || || || || || || |||| Sbjct 3987160 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 3987196 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| |||||||| || |||||||| ||| | |||||| |||||| |||||||| || Sbjct 3987293 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCC 3987352 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| |||| | |||||||| ||||||||||| || || ||||| ||| ||| ||| Sbjct 3987353 AGCGAAGATAAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTT 3987412 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | | || | || || | |||||||| Sbjct 3987413 AACGTTGTCGATGGTGTCCGAGGACTCGA 3987441 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || |||||||| ||| || ||| || ||||| |||||||| || Sbjct 3986782 GTTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCAAGCTGCTTTCCG 3986841 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| | ||||||||||| || ||||| || || || || || ||| |||| Sbjct 3986842 GCGAAGATGAGTCGCTGCTGGTCTGGGGGGATACCCTCCTTATCCTGAATCTTCGACTTG 3986901 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || |||| ||||| | || | ||| | || |||||||| | || Sbjct 3986902 ACATTGTCGATCGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTACCGGTCAAGGTC 3986961 Query 131218 TTTACGAAAATCTGCAT 131234 || || || || ||||| Sbjct 3986962 TTGACAAAGATTTGCAT 3986978 >seq101 Length=835023 Score = 131 bits (144), Expect = 2e-25 Identities = 347/515 (67%), Gaps = 15/515 (3%) Strand=Plus/Plus Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACT 46146 || ||| | || ||||| |||| ||||| || ||||||| | || | | | || Sbjct 111415 CCTTGCATCCGAAAGAAGGCCGATTGGGCTATTCGGTGGATCCAGGACAAGAACTCATCT 111474 Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttC--TGGCAGTT 46204 || ||| ||||| |||| || || || || ||||| | |||| ||| ||| || Sbjct 111475 TTTGCCCAGCGTCTGGTTGCTTTCGCTGCCGTTGAGGG--TATTTTCTTCAGTGGTGCTT 111532 Query 46205 TTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263 | || ||||||| | |||| || | || | ||||||| ||| |||| || |||| Sbjct 111533 TCGCGTCCATCTTCTGGCTCAAGAAGCGTGGTC-TCATGCCTGGCTTGACATTCTCCAAC 111591 Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACT 46323 ||||| || || || || ||||||||||| || ||||| || |||||| ||| || || Sbjct 111592 GAGCTCATTTCTCGTGATGAGGGCCTGCACACCGACTTCGCCTGTCTC--CTA-CACTCT 111648 Query 46324 CGCGTGCACGA-CAAGCTTGCGCCCGACACCGTGC-TGAGCATGTTCAAGGAGGCGGTGG 46381 | | || | | | ||| || | | | | | | |||| || ||| || || || Sbjct 111649 CACTTGAAGAACCGAGCCAGCAAGC-AGATCATTCGTGAG-ATCATCACCGACGCTGTCA 111706 Query 46382 CCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCAC 46441 ||| ||| ||||||| | || | |||||||| || || |||||||||||| | Sbjct 111707 ACATCGAGCAGGAGTTCCTGACCGAGGCACTGCCTTGCGCTCTTCTGGGCATGAACTCGG 111766 Query 46442 AGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGC 46501 | ||| | |||||||||||||| || ||||| || || ||| ||| | | Sbjct 111767 ACCTCATGAAGCAATACATCGAGTTTGTTGCCGACCGTCTTCTTGTGGCACTTGGCAACG 111826 Query 46502 CGAAGCATTTTCACG-CGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGC 46560 |||| |||| || | | ||| || || || || ||| | ||||||||||| | ||| Sbjct 111827 AGAAG-ATTTACAAGTCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGC 111885 Query 46561 AAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 || || || || ||||| ||||| || || || || Sbjct 111886 AAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTA 111920 >seq2 Length=1180426 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 |||||| || |||||||| ||||||| ||| || || || ||||||||||| ||| | Sbjct 395767 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAA 395708 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 ||| | |||||||||||||| || ||||| || ||||| ||| || ||||| | Sbjct 395707 GATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 395648 Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | ||| |||| ||||| | || | ||| | || || || || || || || || Sbjct 395647 GTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 395588 Query 131223 GAAAATCTGCAT 131234 ||| |||||||| Sbjct 395587 GAAGATCTGCAT 395576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011684869760