Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq149 140 2e-28 seq1 140 2e-28 seq101 132 3e-26 >seq149 Length=35441 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1798 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1857 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1858 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1892 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 19269 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 19328 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 19329 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 19363 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 32692 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 32751 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 32752 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 32786 >seq1 Length=5508434 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 5458580 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 5458639 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 5458640 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 5458674 >seq101 Length=835023 Score = 132 bits (146), Expect = 3e-26 Identities = 205/293 (70%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 ||||| ||||| |||||||| ||| ||||||| ||||| | || || || |||||| Sbjct 172482 GACGCCTTCTATCGCTACAAGATGGAGCGCATCCAGACCAAGATTGAAGGCAAAGGAAAC 172423 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314 || || || |||||| | |||||| || || || || | |||| ||||||| | Sbjct 172422 GGCATCAAGACCGTCGTCGTCAACTTGAGCAGCGTTGCCAACTCCCTCGCTCGCCCTGGC 172363 Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374 | ||| | ||||| ||||| | ||| ||||| |||||||| | | |||| ||| Sbjct 172362 GCATACGTCATCAAATACTTCGGTTTCGAGCTTGGTGCTCAGACAAACATCGATCCCAAG 172303 Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 |||| || | ||| | ||||| | || | || |||||||| || ||| || || Sbjct 172302 GACGACCGTTGGATCATCAACGGCGCCCACGATTCCGCCAAGCTCCAAGACCACCTCGAT 172243 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 || || || ||||||||| || || | | ||| | |||||||||||||| Sbjct 172242 GGTTTCATCAACAAGTTTGTTCTCTGCAAGAAGTGCAAGAACCCGGAGACCGA 172190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946428470059