Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01]
189 sequences; 43,559,170 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq1 123 2e-23
seq2 98.7 8e-16
>seq1
Length=5508434
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| || || || |||||||| || |||| ||||| ||||| | ||
Sbjct 3986978 ATGCAAATCTTTGTCAAGACCTTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCATCC 3986919
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| || |||| || ||||| || ||||||||||| || || || ||
Sbjct 3986918 GACACGATCGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAG 3986859
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || ||||| || ||| | |||||| ||| ||| | ||||| ||||||
Sbjct 3986858 CAGCGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACCTTGTCCGACTACAAC 3986799
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || || || | || | ||| | ||| | || || |||
Sbjct 3986798 ATCCAGAAGGAGTCAACTCTTCACCTTGTTCTCCGACTTCGTGGTGGT 3986751
Score = 114 bits (126), Expect = 1e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || || || | ||||| || ||| | ||||| || || ||| | |
Sbjct 3986750 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACGATTACTCTCGAGGTCGAATCTTCT 3986691
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | ||| || |||| || ||||||||||||||||| || || || || ||
Sbjct 3986690 GATACTATCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCAG 3986631
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || ||||| ||||| || || ||| | |||||| |||||| | |||||||||
Sbjct 3986630 CAGCGACTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGTGATTACAAC 3986571
Query 22399 ATTCAAAAAGAATCCACC 22416
||||| || || || |||
Sbjct 3986570 ATTCAGAAGGAGTCGACC 3986553
Score = 111 bits (122), Expect = 1e-19
Identities = 129/174 (74%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||| || || || || | | |||||| | ||| || | ||
Sbjct 3987182 ACTGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGATACCATCGACAATGTGAAGTCG 3987123
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || |||||||||||||| || ||||| ||||| || || || ||||| |||||
Sbjct 3987122 AAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAACAGCGCCTGATCTTTGCTGGCAAG 3987063
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416
||| | |||||| ||| ||| ||||||| |||||||| ||||| ||||| |||
Sbjct 3987062 CAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAAAAGGAATCTACC 3987009
Score = 98.7 bits (108), Expect = 8e-16
Identities = 126/174 (72%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||||||||| || || || | || ||| | ||| | | ||
Sbjct 3987466 ACGGGAAAGACCATCACTCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTTAAGTCG 3987407
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| || || || ||||| || || ||||| || || || ||
Sbjct 3987406 AAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAGCGCCTTATCTTCGCTGGAAAG 3987347
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416
||| | ||||| ||||||| ||||||| |||||||| || || || ||||||
Sbjct 3987346 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACC 3987293
>seq2
Length=1180426
Score = 98.7 bits (108), Expect = 8e-16
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| || || || || || | || || || ||| |||| ||||| ||||| |
Sbjct 395573 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 395632
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
|||| || | ||| | |||| || || || ||||||||||| ||||| || ||
Sbjct 395633 TCCGACACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 395692
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || || ||||| || |||||||| ||| | || ||| ||| ||| | ||| |||
Sbjct 395693 CAGCAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGAGCGACTAC 395752
Query 22396 AACATTCAAAAAGA 22409
||||| || || ||
Sbjct 395753 AACATCCAGAAGGA 395766
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419727033182785
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |