Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq13 104 5e-17 seq101 102 2e-16 seq24 95.1 2e-14 >seq13 Length=1168504 Score = 104 bits (114), Expect = 5e-17 Identities = 169/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 279327 GAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGT 279386 ||| |||| |||| |||||||| || || ||||| |||||| ||||| || ||| Sbjct 900188 GAGGAGGACGATGAGGAGGGTGAGGACCTTTGCAACTGTACTTTCTCCCTCGCCTACGGT 900129 Query 279387 GGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTC 279446 | |||||||| || ||| |||| ||| | ||||||||||| | || || ||||| Sbjct 900128 GCCAAGATTCTCCTCAACCAGACCCATCTCCGCCTCAAGCGTGGCCAGCGTTACGGTCTT 900069 Query 279447 ATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTG 279506 ||| ||||| || | || ||| || || ||||| ||||| |||| ||| | Sbjct 900068 TGCGGCCCCAACGGTTCTGGCAAGTCAACCCTCATGCGTGCCATCAACAACGAGCAGGTC 900009 Query 279507 GAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || || || ||||| ||| ||||| | ||| || | || ||||||||| | ||||| Sbjct 900008 GAGGGTTTCCCTAA-GCAGAGCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTGGACTC 899950 Query 279566 C 279566 | Sbjct 899949 C 899949 >seq101 Length=835023 Score = 102 bits (112), Expect = 2e-16 Identities = 299/452 (66%), Gaps = 18/452 (4%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| | Sbjct 111902 TCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGCA 111843 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG-CGGTCTGCCACAAACTCCAG 251681 | ||||| ||| | ||||||||| || |||| | ||||| || |||||||| | Sbjct 111842 GACTTGTAAATCTTCTCGTTGCCAAGTGCCAC-AAGAAGACGGTCGGCAACAAACTCGAT 111784 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGAT 251741 || || ||| || || ||||||||||| | | | ||||| | |||||| | Sbjct 111783 GTATTGCTTCATGAGGTCCGAGTTCATGCCCAGAAGAGCGCAAGGCAGTGCCTCGGTCAG 111724 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTG-CCAG--AGA 251798 ||| |||| ||| || || || || | || |||| || | | | Sbjct 111723 GAACTCCTGCTCGATGTTGACAGCGTCGGTGA----TGATCTCACGAATGATCTGCTTGC 111668 Query 251799 CAGCT-TGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGT 251857 ||| ||||| || | |||| ||||| | | || | |||||| ||||| | Sbjct 111667 TGGCTCGGTTCTTCAAGTGAGAGTGTAGGAGACAGGCGAAGTCGGTGTGCAGGCCCTCAT 111608 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | ||| |||| ||||||||| | || ||||||||| | ||||| ||| |||||| Sbjct 111607 CACGAGAAATGAGCTCGTTGGAGAATGTCAAGCCAGGCATGAGACCACGCTTCTTGAGCC 111548 Query 251918 AGAAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 ||||||| | ||| |||| | ||| ||| | | |||||| || | | ||||| Sbjct 111547 AGAAGATGGACGCGAAAGCA-CCACTGAAGAAAATACCCTCAACGGCAGCGAAAGCAACC 111489 Query 251977 AGGCGCTCAGCAAACGA------CTTGTCCTG 252002 || |||| ||||| || ||||||||| Sbjct 111488 AGACGCTGGGCAAAAGATGAGTTCTTGTCCTG 111457 >seq24 Length=1044019 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || |||||||||||||||||||||||||| || ||| | || ||||| || | | Sbjct 822460 GTTGGCTCCCTGTCGGGTGGTTGGAAGATGAAGCTTGCTCTCGCCCGAGCCATGCTCCAG 822401 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 || || || || || || || || || || || ||||| | || ||||||| | ||| Sbjct 822400 CGCGCTGACGTTCTCCTCCTGGACGAACCTACTAACCATCTTGATGTCACCAACATCGCC 822341 Query 279816 TGGCTAGTGTCCTACCT 279832 ||||| | ||||||| Sbjct 822340 TGGCTGGAAACCTACCT 822324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834311028949