Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01]
189 sequences; 43,559,170 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq2 167 4e-36
seq1 149 1e-30
seq124 129 1e-24
seq13 129 1e-24
seq24 93.3 8e-14
>seq2
Length=1180426
Score = 167 bits (184), Expect = 4e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | |||| ||| || ||| ||| || |||||||| || |||
Sbjct 395802 CCACCACGGAGGCGGAGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 395743
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | |||||| |||||||| || |||| || ||||| || |||
Sbjct 395742 AGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 395683
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| | ||||||| ||||| ||||| | || || ||
Sbjct 395682 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCACC 395623
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||| || || |||||||||||||||||||| ||||||||
Sbjct 395622 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 395576
>seq1
Length=5508434
Score = 149 bits (164), Expect = 1e-30
Identities = 163/217 (75%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| |||||||| || | || | ||| || || || || ||||||||||| || ||||||
Sbjct 3986980 CCACCGCGAAGACGGAGGACGAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 3987039
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || || || | ||||||||||| ||
Sbjct 3987040 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGGGGG 3987099
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| | ||| || |||||||| || | || || ||
Sbjct 3987100 ATACCCTCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTATCCGAAGACTCGACC 3987159
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451
|| | ||||||||| || || ||||||||||||||||
Sbjct 3987160 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 3987196
Score = 140 bits (154), Expect = 6e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||| ||| || || ||||| || || ||||| |||||
Sbjct 3986524 CCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTC 3986583
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || || |||| || ||||| || ||
Sbjct 3986584 AGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGG 3986643
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||||||||||||||| | |||||| ||||| || || | ||||| ||
Sbjct 3986644 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGATTCGACC 3986703
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | || || || || || ||||||||||||||||| ||||||||
Sbjct 3986704 TCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 3986750
Score = 132 bits (146), Expect = 9e-26
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || ||||| | || | ||| || |||||||| || |||||||| || ||||||
Sbjct 3987264 CCTCCACGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3987323
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || ||||| || || | || || || || ||
Sbjct 3987324 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATAAGGCGCTGCTGATCCGGAGGG 3987383
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | ||| ||| ||||||||||| | || || ||
Sbjct 3987384 ATGCCCTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGACC 3987443
Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437
|| | |||||||| ||||||||
Sbjct 3987444 TCAAGAGTGATGGTCTTTCCCGT 3987466
Score = 84.2 bits (92), Expect = 4e-11
Identities = 217/328 (66%), Gaps = 6/328 (2%)
Strand=Plus/Minus
Query 173117 CACTTTGCTGCGCAGACCCATGTGGACAACTCGTTCGGTAACTCGCTGGCATTTACCATG 173176
|| ||||| || ||| |||| |||||| ||||| |||||| | || |||
Sbjct 1868043 CATTTTGCCGCCCAGTCCCACGTGGACCTGAGCTTCGGCAACTCGTACGGCTTCACCCAC 1867984
Query 173177 AACAACGTCTACGGGACCCACGTTCTCCTGGAATGCGCGAGGCTCTATGGCGGTGTCCAG 173236
| ||||||||| || || |||||||| |||||| | |||| | | | || || |
Sbjct 1867983 ACCAACGTCTATGGAACTCACGTTCTTCTGGAAAGTGCGAAGA---AGGTGGGAGTTAAA 1867927
Query 173237 CGGTTCATCAATGTGTCTACCGACGAAGTATACGGCGAGAGCAGTCTGGGCAAAAAAGAA 173296
|| || || | | || || ||||| |||||||| |||| | | |||| | | ||
Sbjct 1867926 CGATTTATGCACATTTCCACAGACGAGGTATACGGTGAGATCCATGCGGGCCATGACGAT 1867867
Query 173297 GGCCTCGATGAACACTCGTCCCTCGAGCCAACAAACCCATATGCAGCAGCCAAGGCTGGT 173356
| ||||| | | | ||| | | || || |||||||| || || |||||| | |
Sbjct 1867866 GTGCTCGA--ATCCAGCATCCTT-GCCCCGACCAACCCATACGCTGCGAGCAAGGCGGCT 1867810
Query 173357 GCCGAAATGATGGCACGTGCATATCACACATCGTACAAGCTACCAGTCATCGTGACGCGC 173416
||||| ||| | | | | || || | | |||||| || ||||| || ||
Sbjct 1867809 GCCGAGATGCTAGTTCAGTCTTACCAGAAGAGCTTCAAGCTCCCCGTCATTGTTGTACGG 1867750
Query 173417 GGCAACAATGTGTATGGCCCGCATCAGT 173444
|||||||||| || |||||||||||||
Sbjct 1867749 AGCAACAATGTCTACGGCCCGCATCAGT 1867722
>seq124
Length=2242402
Score = 129 bits (142), Expect = 1e-24
Identities = 136/179 (76%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || |||||||| || | ||||| || | |||||| |||||||| ||
Sbjct 2075688 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATC 2075747
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
| || || || || || ||||| || ||||| || || ||||| | |||||| ||
Sbjct 2075748 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCA 2075807
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|||||||| | || || || || | ||||||||| || |||||||||||||| |||||
Sbjct 2075808 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 2075866
>seq13
Length=1168504
Score = 129 bits (142), Expect = 1e-24
Identities = 443/672 (66%), Gaps = 29/672 (4%)
Strand=Plus/Plus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| | ||| || ||||||||||||| || |||||| ||||||
Sbjct 899161 CGCCACTGGATGTACTCGGAGGGAGTGCTGTCCAGGTGGTTATCGATATGGGCGAAAGCG 899220
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGT-CGG 225099
||||| | ||| || || || ||||| |||| | | ||| | || ||
Sbjct 899221 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 899280
Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159
|| | ||| ||||||||||| ||||| || || | ||| || ||||| |||||||||||
Sbjct 899281 ATGAG-CTCACCGGTGAGGACGTTGATCAGAGTGGACTTTCCGGCACCGTTGGGGCCAAT 899339
Query 225160 CACGCCAATCCGGGA--TGACATTGCAACCTGCGAGTTCACGTTG-----CTGAAGATCT 225212
||| |||| ||||| || ||| ||| || | || | |||| | |
Sbjct 899340 GACGGCAATACGGGAGCCGAGCGAGCA--CTGGAAGGAGATGTCGGCAATCTGAGGCTTG 899397
Query 225213 CAGG-GCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGC-TTCATGATGGCACGGTCCTT 225270
||| |||| |||| |||| || | | | || || || || | ||||
Sbjct 899398 GAGGTACCAG---GGTACTGGAAGGACATG-CGGGTGGCGCGCAGAATAGCCTTGGCCTT 899453
Query 225271 GGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTT 225330
|| | | |||||| ||||| |||||||||||||| ||| || | | | |
Sbjct 899454 GGTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAAGCTGAACTCCATCTCGGAGGCGCC 899513
Query 225331 CAGGTCGTAGTAAGATGCAGC-CTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGA 225389
|| |||||||||||| ||| ||| | | || || || || |||||| ||
Sbjct 899514 GAGCTCGTAGTAAGATCGAGCAGATGGGACACGCTG-GACAAAGGCCTTCAGGTTACCCC 899572
Query 225390 GGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGTCA 225448
|| | ||||||||| | |||||| ||||| || ||| | ||| || |||
Sbjct 899573 TGTAACGCTTGAGCTTGAAG---CGCTCGTAGTGAACGATGTGCTG-GCAGACGTTGTCG 899628
Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTGAGGTG 225507
|||||| |||||||||||| || ||||| || | || | | | | || |||||
Sbjct 899629 AGGAAGGTAGAGTCGTGGGAGACGATGATAGAGGTGCAAG---GGGA-GTTCTGGAGGTA 899684
Query 225508 CGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAG 225567
| |||||| ||||| | || |||| ||||| ||||| ||||| ||||||||
Sbjct 899685 CTCCTCGAGCCACTTGACGTTCTTCACATCCAGATGGTTGGTAGGCTCGTCAAGAAGCAG 899744
Query 225568 GATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGA 225627
|| || | | | || || ||| || |||| ||||||||| |||||||| || ||
Sbjct 899745 AATATCGGGAGCCTCGAAGACGGCACGGCACAGAGCCAGCTTCATCTTCCAGCCACCAGA 899804
Query 225628 CAGGGAGCCGAT 225639
|||| || |||
Sbjct 899805 AAGGGCGCTGAT 899816
Score = 95.1 bits (104), Expect = 2e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 225818 GGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCG 225877
||||| ||||| | ||| | || || ||||| | ||||| |||||| | |||
Sbjct 899998 GGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATGAGGGTTGACTTGCCAGAACCG 900057
Query 225878 TTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGG 225937
||||| ||| || |||||| | | || ||||||| | ||| | || ||| |||
Sbjct 900058 TTGGGGCCGCAAAGACCGTAACGCTGGCCACGCTTGAGGCGGAGATGGGTCTGGTTGAGG 900117
Query 225938 AGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTCG 225997
|| |||||| |||| ||||| |||||||| || | ||| |||||||||||||||||
Sbjct 900118 AGAATCTTGGCACCGTAGGCGAGGGAGAAAGTACAGTTGCAAAGGTCCTCACCCTCCTCA 900177
Query 225998 GTCTCCTTTGCCTTGTC 226014
|||| |||||||
Sbjct 900178 TCGTCCTCCTCCTTGTC 900194
>seq24
Length=1044019
Score = 93.3 bits (102), Expect = 8e-14
Identities = 138/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGAC--GACACGTTCGTCAGGCCCTTG 225502
||| | ||||||||||||||| || || || | ||| | | || | | ||||
Sbjct 822266 GTCCAAGAAGCCAGAGTCGTGAGAGACGATCA--GACTGGTGATGTCGGGGTGCGTCTTG 822323
Query 225503 AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562
|||| || ||||| || | |||| |||| || | ||||| ||||||||||||||
Sbjct 822324 AGGTAGGTTTCCAGCCAGGCGATGTTGGTGACATCAAGATGGTTAGTAGGTTCGTCCAGG 822383
Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622
|| || | |||||| ||| ||||| || | ||||| |||||||| ||||| ||
Sbjct 822384 AGGAGAACGTCAGCGCGCTGGAGCATGGCTCGGGCGAGAGCAAGCTTCATCTTCCAACCA 822443
Query 225623 CCGGACAGGGAGCC 225636
|| |||||||||||
Sbjct 822444 CCCGACAGGGAGCC 822457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921620222667080
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