Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2 167 4e-36 seq1 149 1e-30 seq124 129 1e-24 seq13 129 1e-24 seq24 93.3 8e-14 >seq2 Length=1180426 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| || ||| ||| || |||||||| || ||| Sbjct 395802 CCACCACGGAGGCGGAGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 395743 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| |||||||| || |||| || ||||| || ||| Sbjct 395742 AGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 395683 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| ||||| ||||| | || || || Sbjct 395682 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCACC 395623 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 395622 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 395576 >seq1 Length=5508434 Score = 149 bits (164), Expect = 1e-30 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | || | ||| || || || || ||||||||||| || |||||| Sbjct 3986980 CCACCGCGAAGACGGAGGACGAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 3987039 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || || | ||||||||||| || Sbjct 3987040 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGGGGG 3987099 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||| || |||||||| || | || || || Sbjct 3987100 ATACCCTCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTATCCGAAGACTCGACC 3987159 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | ||||||||| || || |||||||||||||||| Sbjct 3987160 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 3987196 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || || ||||| || || ||||| ||||| Sbjct 3986524 CCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTC 3986583 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || |||| || ||||| || || Sbjct 3986584 AGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGG 3986643 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||||||||| | |||||| ||||| || || | ||||| || Sbjct 3986644 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGATTCGACC 3986703 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || || || ||||||||||||||||| |||||||| Sbjct 3986704 TCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 3986750 Score = 132 bits (146), Expect = 9e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || ||||| | || | ||| || |||||||| || |||||||| || |||||| Sbjct 3987264 CCTCCACGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3987323 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | || || || || || Sbjct 3987324 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATAAGGCGCTGCTGATCCGGAGGG 3987383 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||| ||| ||||||||||| | || || || Sbjct 3987384 ATGCCCTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGACC 3987443 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | |||||||| |||||||| Sbjct 3987444 TCAAGAGTGATGGTCTTTCCCGT 3987466 Score = 84.2 bits (92), Expect = 4e-11 Identities = 217/328 (66%), Gaps = 6/328 (2%) Strand=Plus/Minus Query 173117 CACTTTGCTGCGCAGACCCATGTGGACAACTCGTTCGGTAACTCGCTGGCATTTACCATG 173176 || ||||| || ||| |||| |||||| ||||| |||||| | || ||| Sbjct 1868043 CATTTTGCCGCCCAGTCCCACGTGGACCTGAGCTTCGGCAACTCGTACGGCTTCACCCAC 1867984 Query 173177 AACAACGTCTACGGGACCCACGTTCTCCTGGAATGCGCGAGGCTCTATGGCGGTGTCCAG 173236 | ||||||||| || || |||||||| |||||| | |||| | | | || || | Sbjct 1867983 ACCAACGTCTATGGAACTCACGTTCTTCTGGAAAGTGCGAAGA---AGGTGGGAGTTAAA 1867927 Query 173237 CGGTTCATCAATGTGTCTACCGACGAAGTATACGGCGAGAGCAGTCTGGGCAAAAAAGAA 173296 || || || | | || || ||||| |||||||| |||| | | |||| | | || Sbjct 1867926 CGATTTATGCACATTTCCACAGACGAGGTATACGGTGAGATCCATGCGGGCCATGACGAT 1867867 Query 173297 GGCCTCGATGAACACTCGTCCCTCGAGCCAACAAACCCATATGCAGCAGCCAAGGCTGGT 173356 | ||||| | | | ||| | | || || |||||||| || || |||||| | | Sbjct 1867866 GTGCTCGA--ATCCAGCATCCTT-GCCCCGACCAACCCATACGCTGCGAGCAAGGCGGCT 1867810 Query 173357 GCCGAAATGATGGCACGTGCATATCACACATCGTACAAGCTACCAGTCATCGTGACGCGC 173416 ||||| ||| | | | | || || | | |||||| || ||||| || || Sbjct 1867809 GCCGAGATGCTAGTTCAGTCTTACCAGAAGAGCTTCAAGCTCCCCGTCATTGTTGTACGG 1867750 Query 173417 GGCAACAATGTGTATGGCCCGCATCAGT 173444 |||||||||| || ||||||||||||| Sbjct 1867749 AGCAACAATGTCTACGGCCCGCATCAGT 1867722 >seq124 Length=2242402 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| || | ||||| || | |||||| |||||||| || Sbjct 2075688 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATC 2075747 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || || || || ||||| || ||||| || || ||||| | |||||| || Sbjct 2075748 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCA 2075807 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || |||||||||||||| ||||| Sbjct 2075808 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 2075866 >seq13 Length=1168504 Score = 129 bits (142), Expect = 1e-24 Identities = 443/672 (66%), Gaps = 29/672 (4%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | ||| || ||||||||||||| || |||||| |||||| Sbjct 899161 CGCCACTGGATGTACTCGGAGGGAGTGCTGTCCAGGTGGTTATCGATATGGGCGAAAGCG 899220 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGT-CGG 225099 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 899221 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 899280 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || | ||| ||||||||||| ||||| || || | ||| || ||||| ||||||||||| Sbjct 899281 ATGAG-CTCACCGGTGAGGACGTTGATCAGAGTGGACTTTCCGGCACCGTTGGGGCCAAT 899339 Query 225160 CACGCCAATCCGGGA--TGACATTGCAACCTGCGAGTTCACGTTG-----CTGAAGATCT 225212 ||| |||| ||||| || ||| ||| || | || | |||| | | Sbjct 899340 GACGGCAATACGGGAGCCGAGCGAGCA--CTGGAAGGAGATGTCGGCAATCTGAGGCTTG 899397 Query 225213 CAGG-GCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGC-TTCATGATGGCACGGTCCTT 225270 ||| |||| |||| |||| || | | | || || || || | |||| Sbjct 899398 GAGGTACCAG---GGTACTGGAAGGACATG-CGGGTGGCGCGCAGAATAGCCTTGGCCTT 899453 Query 225271 GGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTT 225330 || | | |||||| ||||| |||||||||||||| ||| || | | | | Sbjct 899454 GGTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAAGCTGAACTCCATCTCGGAGGCGCC 899513 Query 225331 CAGGTCGTAGTAAGATGCAGC-CTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGA 225389 || |||||||||||| ||| ||| | | || || || || |||||| || Sbjct 899514 GAGCTCGTAGTAAGATCGAGCAGATGGGACACGCTG-GACAAAGGCCTTCAGGTTACCCC 899572 Query 225390 GGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGTCA 225448 || | ||||||||| | |||||| ||||| || ||| | ||| || ||| Sbjct 899573 TGTAACGCTTGAGCTTGAAG---CGCTCGTAGTGAACGATGTGCTG-GCAGACGTTGTCG 899628 Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTGAGGTG 225507 |||||| |||||||||||| || ||||| || | || | | | | || ||||| Sbjct 899629 AGGAAGGTAGAGTCGTGGGAGACGATGATAGAGGTGCAAG---GGGA-GTTCTGGAGGTA 899684 Query 225508 CGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAG 225567 | |||||| ||||| | || |||| ||||| ||||| ||||| |||||||| Sbjct 899685 CTCCTCGAGCCACTTGACGTTCTTCACATCCAGATGGTTGGTAGGCTCGTCAAGAAGCAG 899744 Query 225568 GATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGA 225627 || || | | | || || ||| || |||| ||||||||| |||||||| || || Sbjct 899745 AATATCGGGAGCCTCGAAGACGGCACGGCACAGAGCCAGCTTCATCTTCCAGCCACCAGA 899804 Query 225628 CAGGGAGCCGAT 225639 |||| || ||| Sbjct 899805 AAGGGCGCTGAT 899816 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225818 GGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCG 225877 ||||| ||||| | ||| | || || ||||| | ||||| |||||| | ||| Sbjct 899998 GGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATGAGGGTTGACTTGCCAGAACCG 900057 Query 225878 TTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGG 225937 ||||| ||| || |||||| | | || ||||||| | ||| | || ||| ||| Sbjct 900058 TTGGGGCCGCAAAGACCGTAACGCTGGCCACGCTTGAGGCGGAGATGGGTCTGGTTGAGG 900117 Query 225938 AGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTCG 225997 || |||||| |||| ||||| |||||||| || | ||| ||||||||||||||||| Sbjct 900118 AGAATCTTGGCACCGTAGGCGAGGGAGAAAGTACAGTTGCAAAGGTCCTCACCCTCCTCA 900177 Query 225998 GTCTCCTTTGCCTTGTC 226014 |||| ||||||| Sbjct 900178 TCGTCCTCCTCCTTGTC 900194 >seq24 Length=1044019 Score = 93.3 bits (102), Expect = 8e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGAC--GACACGTTCGTCAGGCCCTTG 225502 ||| | ||||||||||||||| || || || | ||| | | || | | |||| Sbjct 822266 GTCCAAGAAGCCAGAGTCGTGAGAGACGATCA--GACTGGTGATGTCGGGGTGCGTCTTG 822323 Query 225503 AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562 |||| || ||||| || | |||| |||| || | ||||| |||||||||||||| Sbjct 822324 AGGTAGGTTTCCAGCCAGGCGATGTTGGTGACATCAAGATGGTTAGTAGGTTCGTCCAGG 822383 Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622 || || | |||||| ||| ||||| || | ||||| |||||||| ||||| || Sbjct 822384 AGGAGAACGTCAGCGCGCTGGAGCATGGCTCGGGCGAGAGCAAGCTTCATCTTCCAACCA 822443 Query 225623 CCGGACAGGGAGCC 225636 || ||||||||||| Sbjct 822444 CCCGACAGGGAGCC 822457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620222667080