Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2 132 1e-25 seq124 95.1 3e-14 seq1 87.8 4e-12 >seq2 Length=1180426 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || |||| ||||| || || ||||| || |||||| Sbjct 395802 CCACCACGGAGGCGGAGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 395743 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | || || || |||||||| || ||||| || || ||| Sbjct 395742 AGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGG---TCCGGG 395686 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || |||||||| || | || ||||| || |||| ||| || || Sbjct 395685 GGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCC 395626 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||||||||| || || ||||||||||| |||||||| Sbjct 395625 ACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 395576 >seq124 Length=2242402 Score = 95.1 bits (104), Expect = 3e-14 Identities = 131/182 (72%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| ||| ||||| || || || | || ||||| ||||||||| Sbjct 2075688 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATC 2075747 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 | ||||| ||| || ||| ||||| || ||||||||||| || | || || || Sbjct 2075748 AATCGCTGCTGA---TCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTTGACATTG 2075804 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || || ||||| ||||| || || || ||||| ||| Sbjct 2075805 TCAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACG 2075864 Query 288463 AA 288464 || Sbjct 2075865 AA 2075866 >seq1 Length=5508434 Score = 87.8 bits (96), Expect = 4e-12 Identities = 160/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || ||||| | || || || |||| || || || || || || || || Sbjct 3986521 TGACCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCA 3986580 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 || ||||| || || || | || || || || || || || ||||| || ||| Sbjct 3986581 CTCAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGG---TCT 3986637 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || || || || || || || |||| || || || || |||| ||| ||| Sbjct 3986638 GGGGGGATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGAT 3986697 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || |||||||| ||||| || ||||||||||| |||||||| Sbjct 3986698 TCGACCTCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 3986750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179651543393142