Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01]
189 sequences; 43,559,170 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1 116 4e-21
seq101 111 1e-19
seq2 98.7 9e-16
seq124 95.1 1e-14
>seq1
Length=5508434
Score = 116 bits (128), Expect = 4e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| |||||||| | || |||||| ||| || ||||| || |||
Sbjct 3986554 GTCGACTCCTTCTGAATGTTGTAATCACTCAGGGTGCGACCATCCTCCAGCTGCTTACCA 3986613
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| | || | ||||||||| || || || |||||||||||||| || ||| ||||
Sbjct 3986614 GCAAAAATAAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGAATCTTCGACTTG 3986673
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| || || | | ||||| |||| || | ||| |||||||| || ||
Sbjct 3986674 ACATTGTCGATAGTATCAGAAGATTCGACCTCGAGAGTAATCGTCTTGCCGGTGAGGGTC 3986733
Query 127097 TTTACAAAAATCTGCAT 127113
|| || |||||||||||
Sbjct 3986734 TTGACGAAAATCTGCAT 3986750
Score = 98.7 bits (108), Expect = 9e-16
Identities = 129/176 (73%), Gaps = 2/176 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| | ||||| || || ||||| ||||||
Sbjct 3987294 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCA 3987353
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | ||||||||||| ||||| ||||||||||||||| ||| ||| |||
Sbjct 3987354 GCGAAGATAAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTA 3987413
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091
| |||| |||| |||||||| |||||| || | || | || || || ||||
Sbjct 3987414 ACGTTG-TCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTTCCCGTCA 3987468
Score = 95.1 bits (104), Expect = 1e-14
Identities = 132/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
||||| || ||||| || ||||| ||| | || || ||| || ||||| || |||
Sbjct 3987010 GTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCA 3987069
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||||| ||||| || ||||| || || |||||||||||| ||| ||| |||
Sbjct 3987070 GCAAAGATCAGGCGCTGTTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTC 3987129
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||| |||| | |||||| |||| ||| | || ||||| || || ||
Sbjct 3987130 ACATTGTCGATGGTATCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 3987189
Query 127097 TTTAC 127101
|| ||
Sbjct 3987190 TTGAC 3987194
>seq101
Length=835023
Score = 111 bits (122), Expect = 1e-19
Identities = 330/502 (66%), Gaps = 19/502 (4%)
Strand=Plus/Plus
Query 47085 AAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCA-CTCTGGCCGAACGTTT 47143
|||||||| ||||| || || || | || | ||| ||| || | ||| | ||| |
Sbjct 111430 AAGGCCGATTGGGCTATTCGGTGGATCCAGGACAAGAAC-TCATCTTTTGCCCAGCGTCT 111488
Query 47144 GATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT-GCGGCGATATTTT 47202
| | |||||||| ||| ||||| | |||||| || ||||| ||| | || || |
Sbjct 111489 GGTTGCTTTCGCTGCCGTTGAGGGTATTTTCTTCAGTGGT-GCTTTCGCGTCCATCTTCT 111547
Query 47203 ACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAG 47262
| || | || | ||||| ||| | || || ||||||||| || || | |
Sbjct 111548 GGCTCAAGAAGCGTGGTCTCATGCCTGGCTTGACATTCTCCAACGAGCTCATTTCTCGTG 111607
Query 47263 ACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAA---CACT---AGAGTCGATC 47316
| || |||||||||||| |||| ||||||||| ||||| |||| ||| ||| |
Sbjct 111608 ATGAGGGCCTGCACACCGACTTCGCCTGTCTC--CTACACTCTCACTTGAAGAACCGAGC 111665
Query 47317 AAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGG 47376
| | || | | | | || || | |||| || ||| ||| ||| ||
Sbjct 111666 CAG-------CAAGCAGATCATTCGTGAGATCATCACCGACGCTGTCAACATCGAGCAGG 111718
Query 47377 AGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAA 47436
|||| | ||||||| ||||| || | |||| |||||| |||| | ||||
Sbjct 111719 AGTTCCTGACCGAGGCACTGCCTTGCGCTCTTCTGGGCATGAACTCGGACCTCATGAAGC 111778
Query 47437 AGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACC 47496
| |||||||| ||||| |||||||| || || || || | |||||||||
Sbjct 111779 AATACATCGAGTTTGTTGCCGACCGTCTTCTTGTGGCACTTGGCAACGAGAAGATTTACA 111838
Query 47497 ACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTT 47556
| | | || || ||||| || ||| | ||||| || || | |||||||||||||| |
Sbjct 111839 AGTCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCT 111898
Query 47557 TCGAGAAGCGCGTCGGCGAATA 47578
|||||||||| || || || ||
Sbjct 111899 TCGAGAAGCGTGTTGGTGATTA 111920
>seq2
Length=1180426
Score = 98.7 bits (108), Expect = 9e-16
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || | || | ||||| || | || ||| || || || ||||| |||
Sbjct 395805 GCACCACCACGGAGGCGGAGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCG 395746
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
| || || || ||| || ||||| || || ||| |||| | ||||||||| || ||
Sbjct 395745 CTCAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGG 395686
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTC 127062
|| || |||||||||||| ||| || ||||| |||| |||| ||||| | | |||
Sbjct 395685 GGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATAGTGTCGGAAGACTC 395627
Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || | ||| | ||| || || || || || || || || ||||||||
Sbjct 395626 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 395576
>seq124
Length=2242402
Score = 95.1 bits (104), Expect = 1e-14
Identities = 129/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| | ||||| ||| || ||||| ||||| ||| |||||
Sbjct 2075688 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATC 2075747
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
|||||||||||||| || || || |||||||| ||| ||| || ||||| | ||
Sbjct 2075748 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCA 2075807
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| |||||||| |||||| || | ||| | || ||||| || || || || || |||
Sbjct 2075808 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAA 2075867
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475499676629360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |