Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1 116 4e-21 seq101 111 1e-19 seq2 98.7 9e-16 seq124 95.1 1e-14 >seq1 Length=5508434 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| |||||||| | || |||||| ||| || ||||| || ||| Sbjct 3986554 GTCGACTCCTTCTGAATGTTGTAATCACTCAGGGTGCGACCATCCTCCAGCTGCTTACCA 3986613 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | || | ||||||||| || || || |||||||||||||| || ||| |||| Sbjct 3986614 GCAAAAATAAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGAATCTTCGACTTG 3986673 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| || || | | ||||| |||| || | ||| |||||||| || || Sbjct 3986674 ACATTGTCGATAGTATCAGAAGATTCGACCTCGAGAGTAATCGTCTTGCCGGTGAGGGTC 3986733 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 3986734 TTGACGAAAATCTGCAT 3986750 Score = 98.7 bits (108), Expect = 9e-16 Identities = 129/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | ||||| || || ||||| |||||| Sbjct 3987294 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCA 3987353 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||||||||||| ||||| ||||||||||||||| ||| ||| ||| Sbjct 3987354 GCGAAGATAAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTA 3987413 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 | |||| |||| |||||||| |||||| || | || | || || || |||| Sbjct 3987414 ACGTTG-TCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTTCCCGTCA 3987468 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || ||||| || ||||| ||| | || || ||| || ||||| || ||| Sbjct 3987010 GTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCA 3987069 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| ||||| || ||||| || || |||||||||||| ||| ||| ||| Sbjct 3987070 GCAAAGATCAGGCGCTGTTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTC 3987129 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||| |||| | |||||| |||| ||| | || ||||| || || || Sbjct 3987130 ACATTGTCGATGGTATCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 3987189 Query 127097 TTTAC 127101 || || Sbjct 3987190 TTGAC 3987194 >seq101 Length=835023 Score = 111 bits (122), Expect = 1e-19 Identities = 330/502 (66%), Gaps = 19/502 (4%) Strand=Plus/Plus Query 47085 AAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCA-CTCTGGCCGAACGTTT 47143 |||||||| ||||| || || || | || | ||| ||| || | ||| | ||| | Sbjct 111430 AAGGCCGATTGGGCTATTCGGTGGATCCAGGACAAGAAC-TCATCTTTTGCCCAGCGTCT 111488 Query 47144 GATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT-GCGGCGATATTTT 47202 | | |||||||| ||| ||||| | |||||| || ||||| ||| | || || | Sbjct 111489 GGTTGCTTTCGCTGCCGTTGAGGGTATTTTCTTCAGTGGT-GCTTTCGCGTCCATCTTCT 111547 Query 47203 ACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAG 47262 | || | || | ||||| ||| | || || ||||||||| || || | | Sbjct 111548 GGCTCAAGAAGCGTGGTCTCATGCCTGGCTTGACATTCTCCAACGAGCTCATTTCTCGTG 111607 Query 47263 ACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAA---CACT---AGAGTCGATC 47316 | || |||||||||||| |||| ||||||||| ||||| |||| ||| ||| | Sbjct 111608 ATGAGGGCCTGCACACCGACTTCGCCTGTCTC--CTACACTCTCACTTGAAGAACCGAGC 111665 Query 47317 AAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGG 47376 | | || | | | | || || | |||| || ||| ||| ||| || Sbjct 111666 CAG-------CAAGCAGATCATTCGTGAGATCATCACCGACGCTGTCAACATCGAGCAGG 111718 Query 47377 AGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAA 47436 |||| | ||||||| ||||| || | |||| |||||| |||| | |||| Sbjct 111719 AGTTCCTGACCGAGGCACTGCCTTGCGCTCTTCTGGGCATGAACTCGGACCTCATGAAGC 111778 Query 47437 AGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACC 47496 | |||||||| ||||| |||||||| || || || || | ||||||||| Sbjct 111779 AATACATCGAGTTTGTTGCCGACCGTCTTCTTGTGGCACTTGGCAACGAGAAGATTTACA 111838 Query 47497 ACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTT 47556 | | | || || ||||| || ||| | ||||| || || | |||||||||||||| | Sbjct 111839 AGTCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCT 111898 Query 47557 TCGAGAAGCGCGTCGGCGAATA 47578 |||||||||| || || || || Sbjct 111899 TCGAGAAGCGTGTTGGTGATTA 111920 >seq2 Length=1180426 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||||| || | || ||| || || || ||||| ||| Sbjct 395805 GCACCACCACGGAGGCGGAGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCG 395746 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || || || ||| || ||||| || || ||| |||| | ||||||||| || || Sbjct 395745 CTCAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGG 395686 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTC 127062 || || |||||||||||| ||| || ||||| |||| |||| ||||| | | ||| Sbjct 395685 GGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATAGTGTCGGAAGACTC 395627 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | ||| || || || || || || || || |||||||| Sbjct 395626 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 395576 >seq124 Length=2242402 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| ||| || ||||| ||||| ||| ||||| Sbjct 2075688 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATC 2075747 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 |||||||||||||| || || || |||||||| ||| ||| || ||||| | || Sbjct 2075748 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCA 2075807 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | |||||||| |||||| || | ||| | || ||||| || || || || || ||| Sbjct 2075808 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAA 2075867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499676629360