Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305495.1_202015-10-01] 189 sequences; 43,559,170 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 125 8e-24 seq1 113 5e-20 seq124 105 8e-18 >seq2 Length=1180426 Score = 125 bits (138), Expect = 8e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||||| ||||| ||||||||| || || || | || || Sbjct 395785 CACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCTTC 395726 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||||||||| || | ||||||||||| | || | | |||||||||| Sbjct 395725 AAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTG 395666 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 |||||| ||||| ||| | | | |||||| || ||||| || | ||||| || | Sbjct 395665 GATCTTGGACTTGA-CGTTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCT 395607 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 | ||||| || || || || ||||| ||||| |||| Sbjct 395606 TCCCCGTGAGGGTCTTGACGAAGATCTGCATCTTGC 395571 >seq1 Length=5508434 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| | || || | || || |||||||| |||||||| Sbjct 3986787 CTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCAAGCTGCTTTCCGGCGAA 3986846 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||| ||| |||||| ||||| | Sbjct 3986847 GATGAGTCGCTGCTGGTCTGGGGGGATACCCTCCTTATCCTGAATCTTCGACTTGACATT 3986906 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||||| || ||||| || | ||||| || || || |||| || || || Sbjct 3986907 GTCGATCGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTACCGGTCAAGGTCTTGAC 3986966 Query 46582 AAAGATTTGCAT 46593 |||||||||||| Sbjct 3986967 AAAGATTTGCAT 3986978 Score = 113 bits (124), Expect = 5e-20 Identities = 129/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| ||||||||||| || ||||| Sbjct 3987299 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAA 3987358 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||| || | || | || |||||||||| ||||||| ||| | ||| Sbjct 3987359 GATAAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTT-AACGT 3987417 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | | ||||| || || || || | |||||||| || ||||||| Sbjct 3987418 TGTCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTTCCCGTCA 3987468 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||||||||| || || || | || || ||||||||||| || || Sbjct 3987016 TCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAG 3987075 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| |||||| ||||||| || | | |||||||||| ||||||| ||| | | Sbjct 3987076 ATCAGGCGCTGTTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTCACATTG 3987135 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || || || || || || | |||||||| ||||| || || || || || Sbjct 3987136 TCGATGGTATCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 3987194 >seq124 Length=2242402 Score = 105 bits (116), Expect = 8e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| |||||||| | || || |||||||| |||||||| | Sbjct 2075686 CCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGA 2075745 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| |||||||| || | || | | |||||| ||| |||||| ||||| | Sbjct 2075746 TCAATCGCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTTGACATTGT 2075805 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| || || || || | |||||||| |||||||| || || || || | Sbjct 2075806 CAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 2075865 Query 46584 A 46584 | Sbjct 2075866 A 2075866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237064624280